Detailed information of KAJ7385010.1 in Desmophyllum pertusum

Genomic Location: MU825883.1:1235741...1242921
NR annotation: KAJ7385010.1, Saccharopine dehydrogenase [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q09694Saccharopine dehydrogenase [NAD(+), L-lysine-forming] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lys3 PE=1 SV=2
Q870G1Saccharopine dehydrogenase [NAD(+), L-lysine-forming] OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=lysA PE=3 SV=2
P38997Saccharopine dehydrogenase [NAD(+), L-lysine-forming] OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=LYS5 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001866 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01262
all species →		AlaDh_PNT_CAlanine dehydrogenase/PNT, C-terminal domainDomainInterproscan
PF05222
all species →		AlaDh_PNT_NAlanine dehydrogenase/PNT, N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036291
all species →		Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR007698
all species →		DomainAlanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domainInterproscan
IPR007886
all species →		DomainAlanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminalInterproscan
IPR027281
all species →		FamilySaccharopine dehydrogenase [NAD(+), L-lysine-forming]Interproscan
IPR051168
all species →		FamilyAlpha-aminoadipic semialdehyde synthaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11133
all species →		SACCHAROPINE DEHYDROGENASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004754
all species →		Molecular Functionsaccharopine dehydrogenase (NAD+, L-lysine-forming) activityInterproscan
GO:0009085
all species →		Biological Processlysine biosynthetic processInterproscan
GO:0004753
all species →		Molecular Functionsaccharopine dehydrogenase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0019878
all species →		Biological Processlysine biosynthetic process via aminoadipic acidInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00290LYS1; saccharopine dehydrogenase (NAD+, L-lysine forming)EC:1.5.1.7
Lysine degradationko00310deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Desmophyllum pertusum tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Desmophyllum pertusum, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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