Gene detail

Detailed information of KAJ7385046.1 in Desmophyllum pertusum

Genomic Location: MU825883.1:1785476...1817951
NR annotation: KAJ7385046.1, Transcription factor 25 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7385046.1

ATGTCCTCTCGCGTTTTGAGGAAGTTACAGGGCGATAAAGAATTTGAAATATCGCATGATGACGAGGAGGACGAAGATGAGTTAACCTTTACTTCAGCTAAGTCGAGAAGGAAACAGAAAGCCGTTGTAAATCCTTTTGATTTGTTGAATGTAGATGATGAGCAGTCAGATGAGGATTCTCAAGATAATCAAGAAGAAGAAACCCCAACAGAGGTTGTGGAACAAAATGTAAAAGAAGAGAAACCAAGTTCTATAGAGCCTGCTGAAAAACAGACATCTAAAAAGAAAAGAAAGAAAAAGAAGAAGAAGGGAAAAGGAGATACAGCAAAAGAAAATGGGAAACTAATTAATGAAGAGGACAGCATCGATGGTGTCATTGAAGAAGTGAACAACATGCCAAGGACTGATGGTCCAATGGCAACCTTGGGAGAGAGCACCTCTAGGATTCTGGATACAAAAGCTTTGCTTGGAGTAGAGCACAGAAACTTGAATGCAGAAAATGAAATGAAGAAGAGGTTTGGATCTCATATTGTCAGAGCAGAACAAAGACAAAGAAGAGCACATCAGCGGGTGTATCATCGCTCAACAAGGTTGGTTACAGTGAAGCCATCATGGCCACACATGGGAGCAACTGGAATAAGCATGAAGCTCTTGGAAACAAAACGTGGGTACAGCTACTTTGCCTTTGAACACTCCCCTTCTTATCAGGAAGTCCAGTTTCTATTTCTTGATGCAGTGGAATCATTAAACCCCAACAACATATCTGCCATTTTAAACACTCACCCTTACCATGTAGACTCTTTGCTGCAACTCAGTGAAATCTGTAAGATGGGAGAAGATTATCAAATGGCTGCAGAGTTAATAGAAAGAGCCCTCTATTGTTGTGAACAGAGTTTCCATACTTTGTTCAGCCTCACACAAGGCTGGTCAAGGCTTGACTACAGAAGGGCAGAAAACAGGTCATTCTTTATTGCTGTGTTTCGTCAAATCATCTTTGTGGGACAAAAAGGCTGCTACAGAACAGCTTTGGAGTTGTGCAAGCTCCTGCTTAGTCTAGATCCAGATGAAGATCCTCTTGGTGTTCTACTTATGATTGATTTCTATGCCTTACAGTCTGAGCAGTTCACTTTCCTCGTCAGACTATTTGAGGAATGGGAGTCCCACAGGAACTTGTCTCAGCTACCAAATTTTGCTTTCTCTGTGGCTCTCGCATACTTCCAATCCAACAGACAGCAGGGTCAGACAAGGAGAGCTGATGAATTGCTCCAGATGGCATTGATTATGTTTCCAATGGTATTGTCTCCTCTTATGGAAAAGTGTAATGTTGCGCTGGACACCACTCTCATCACGCACCCATTCTTTTCTCCTGTACCAGGAAACAGTGAGCCCATTGCTTTGAAGCAGCTTGAAGCACTGTACATAGGCAGGACATATCATGCGTGGAAAGATCCCGAGGTCATCGACTGGCTTGCCGTGAATGCTAAAAAAGTTATAGAAAGAGTTGAAGCACGAGATCCTTTAGTTGAAGATTGTAAATACAAGCGACAAGTGCGTTACAGAGGAACACCACGTAATGTTTACAGACACATAGTTATGTCAGATATTAAAGATGCCACCGCATCCCTTCCTATGCATTCTTATCCAGCACGGTTTGATTCTCAATTCTATTATTTTCTTTTAGGACTTGGCAATGTTCCTCTTTTGTCCTATGATCCTTTGCCACCTCAAGATTCAGTGACAGGATACATTCGCCAACCAAGGAGGAGTGTAACTCTTCAGGAAGAGCACGGAGCTTTGTCCATGTTTTTCCGCTCACTCTTGCCTTCCTTCAACGCCCAGAACCCTAACGGGCCGCGCGTGGAAGTAAGGCTTGAACAGCCCATAGAGCTAGAGGGAGCAGAGGGTGGACCCAGACCTCTGCGGGATACAGAGCTCGGGCGGGGCGTGGAAAACCTTATGGTCGCCATGAGAGAACTACTCACTACTCTCAGTTACCGTGGACAGCCTGAAGAGGCTGGTAACGAGGAAGGGGATAATGCTGGAGAAAATGATTATGCTGAAGATGAATGGGATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R3L2	Ribosome quality control complex subunit TCF25 OS=Mus musculus OX=10090 GN=Tcf25 PE=1 SV=2
Q9BQ70	Ribosome quality control complex subunit TCF25 OS=Homo sapiens OX=9606 GN=TCF25 PE=1 SV=1
A0A8I6ASZ5	Ribosome quality control complex subunit TCF25 OS=Rattus norvegicus OX=10116 GN=Tcf25 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004418 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04910 all species →	Tcf25	Transcriptional repressor TCF25	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006994 all species →	Family	TCF25/Rqc1	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22684 all species →	NULP1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:1990112 all species →	Cellular Component	RQC complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24970	TCF25, RQC1; transcription factor 25	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.