Gene detail

Detailed information of KAJ7387206.1 in Desmophyllum pertusum

Genomic Location: MU825874.1:3091132...3107627
NR annotation: KAJ7387206.1, Mediator of RNA polymerase II transcription subunit 13-like [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7387206.1

ATGACAAAAGGCTTACCCACGGCAAATCTACTGACAAATGTTACTCAGAAGCGCCATCCAGATGTTGCTTATGCGCATAATGCAAAGAAGTATTCCCTGCAGGGTCAAACAGCAGCTCTGCAGAATACGACAGGAATGCCTGGACACAAGATTCCTACCATCGGTGTAAAATCAGAGGTGAAAGTTCCACAACCTTCAACTTCACTGTTGAGATTGAACTCTTCAATAATGACATCACAGTCTTTTGTAAATGGACAGGCGGAAATGTTGGTTAAAAACGAACAAGTTTCTGGAGAGGATTTTGTTAGTAACAAGGACACTGACACAAAGGAGGACACGGAGCATAATTGCTACATTTTGCCTTTGGAAAGTGGTTTTAGTGTCCCTCCACTGCCTAGTGACCCTCTGGATTGCCGACCCATTGGTGATCTTACAATTCCACAGGATGTTTTAACACCTCCTCCATTGGAGCCAACTTTGTGGGAAAGTTGTAGTGGCAAGAGACCTTCAACTGATAGCGCCTTCGAGTGTGCTCCTTCGCCAGCCAAAAGAAGACGTGAGTCTTCTACTGGGAGATCCAGATCCGATAGCAGTGGAGGAGGTCGTCCAAAGGGACGCAGGAACAGCTCTCAGCCATCCCCTGCGACCACACCCCTGTCGGATCCCTTTACTCCTCAACCCGAGGATCAAGAGATAGAAATTATTCAGCCACCAATAAAATCACCAACACAAGTGAGGGCTCCTTCAACAAAGCCTCCTCGACGGAGAAGTAGCACCACAGCTGGTGACAGTCCATCGGTTCCTTTACCAGCAGATCTCAGCAAACCTCCGGCGCGAGTAAAAAATAGAAGACAGAGCTCTCGTAAAAAACAGCAGGAGGAAAAGGAACGGCTGTCAAAAGGGGTGGAAGAAGTTAAGCCCCGCCCACAGAAGAATGAGAAAGGAACATTTCCTAGTTTTTCATCGTCAGATGATGAACACGAACCCACCCCTCGGTCATCAAATCTTATGACGGAGCAAGACCTTGCAGTGACACTTAACGACCTTGATCAGTTGTTTGACACTGACGAAGAAGAAGATGAGTCAGGGCAATCAAAAGCCATGAAGATTGATTTTGTGTCCCATCAGGTTCCTCCGTATGATTCCATCACAAGTATCAACACTCATCACTCATCGCTCATGAATATGGGTGTGGTGCCGCAACAGGATTTGGCACGCATGTTCCCCACACCTCCATCTCTGGAGACAGTGTCGCACTCTCCACCTTGTTCTGTTGGCAATGATTACATCAGTCCTGGAAGCGTCAAGACTGTAGTGCACAGTGCAGTGTTCTCTCCTGAGTCGCATCATTTGATGCACTTCGCAGGTGTTGATGCCGATCAAGATAAACAGCACAGTCCAATGGAACTTGGACCTGTGTTTGAGTTTCCTAAATTCCAAGAGTTTCCAGTTTCCTACACATTTGAAGCTGTAGTGGGTCTGCCAAGTTACAAAGGCCTCCCGTCTGTGATGCAGTACTCCCCCTCTTGGCAGCAGGTACCTCAGAAGACATGGAATTTATCAGTCACCAAAGTGGAAAGTGCCCCTGATGTCTTAAATTGTGACGTCGCCATCGGCACTCCCTCACCAGCAGTGGGCTACGCATACCCCCATCCTGCAAGTGTTAATAGCGACGTCAAACATTTGACGTCAGCAGCAATGTCTCCTGCCTCTCCAGCATCATCAGTGTCATCATTCTCCATGTCAACACAGTTTCCAAAGGCTTTTCATGGAAGTACCTTTGTTATGAAACCTTTGTTCCAAACACCCCTTCCAGAGGTGAATTCATTATCAAAGGTTCTGACTTTATCAGACTCATCCGCGAACTACTTTAGTGACAAATGTTATGACAGTGTAAGGCTCTGTTCGTGTTCGACACTCTCAGAGGGCATACATCCTAAAGTGTCTATCCGCAAAGGTAAAGACTATGATAGGTGTGTCTGTGGTTTTGGTGCTCTGGAAGGAATGAAATTCACTGCCGGCACAGGTCTGTTTCCTGATGACGTTTATACAGCCTTGTCTGAAAACATGAAACCACTTAGGAAGGAACGTGTTTCTCAAACTGCGCTTGATGTTAGGAAAGAGGGTTCAATGTCACTCTGTGCGAAAAGACGAGGGTCAACTGTGATTGTTCCATCACAAGTTCCATTTTGTTTGCTGGAGGAGATTGTGAGTCAATGTTCGTCACCATTTTCTTGTTCCAACTTGAAGTATCAGCTTATGTGCAAGGGCCATCATGGGATTGTGAAGCAGGTGTCTGGTGCTTGGTCTCAAAATAAAGGTGCAGAGAGTGGTATTTTACAGAGTGTTCCTCATCCTACTGCTGTCAACGCTCTCAACTTTCTTCGTCAGCTAATGCAGGATGCCCTGCAAAAATCGACAAGTAGAAAAACATGGGAGCAACCCAACGGAACAGTTGTTCAGGGACCTTTGTCTTGGAAGCAACTTCATCATCTAGCGACAAAAGGTAATGAGGAAACACCCCGAGCCCAGCCAATTCCATCAGTTACAGTAGGATATGGAGGAGATTGGATGTCTCTTTCTCCTATTGCTTTACAGTTTTGGGAGAAGCTGTTGCTTGAACCATACTCTTGTCAGCGGGATGTGGCATATATTGTTGTGGCGCCAGAGAACGATTTAGTGCTGAACAATGTGAAGTTGTTCTTTAAAGAGTTCAGTGCAGTTTATGAGACTTGTCGTCTTGGCCAACATGTCGCCATCACCAAGGTGCTTAGAGATGGTATACTGCGGATAGGACAAAAGTCACTGAAGCTTGCAAAAGAGCCTGTAGATGATTGGTTCACGCATCAAGGTTGTTCTTCTGATGGAGCAAAGCTTAAACTCTATGCCCAAGTCTTTAAACATCACTTAGGACCGTATCTCGCTTCTCTGAATCTAGACAGACACCTGTTGGATTGTGAGAAGGGAGACAAATCAGATGATAAGGGATCATCCAAGTTTGGGACGGATGGCGAAAGACCTAGTGGTAACAGTGCTGGGACTCCAAATTCAGAGCAATCTCCATCGCCATTTGGAGAAGAGGAAAGTGAGCAGAACAGTGAGGACCCACCCACTGTTGTAGTTTACATCGTGAACCCGTTCAGTAGTAACTCAAGAGAAGAAAGCTTCCCTTCCTACGTGGGGCTCTTGCGGTGCATTGCCGAGATTATACCAGATATTTCAGAAACTGGCAAAAAGAATATCGTCTTTCAGGTTGTCCCAATTCAACAGATTCTACAAGTGGACACACTGACTGGTAGTCGTGATGCAGCATTAACGTTTGTGACACAGCTCAAGTGCCTGGCCTTCTCTGTATTTTCCCGATGTCGTAAGAGCTTACCGCTGAATCTAAATGCTAAGTCCTTAACAGGATTTGGACCAGCTGCAAGGCACGAGGCTTTGCTGCGTCAGAGAGAGCTGGAAAATGCTAAAGTCTACTCAGCACCATATGTCCTCTGCCACCCAATACCTATGCCACCGGCTGATTCCGCAGACGAAACTGCAACAAGTTTGATGGCATCGATGCAGAATGCCTCTGTGTTGTACTGTGGTTACTGTCTCTCCCACGATGATAACTATCTTCTTGCAGTCTGTACAGATAGTGTAGGAGAACTCATCGAATCTTGTGTCATATCGGTCGAACCATGCCTGAGGCCTGACGGCAGGCAACGCAAGACTGCTGCTCGCACAAAGGCACTCATCAAATTATGGGAGTTTTGTCAAGGTGTCATTGCAACATCACTGATTCCTTGGAGACTGGTGATCAGTAAACTCGGGAGGATTGGGCCAGAGGAATTGAAGGACTGGAAAGAAATCTTGAGTAAGACGTCTGTGCTGTCAGGGGACCAGATGTTTAAAGACACCTGCAAAACTTGTTTCTCAATGAAACAGAAAAATCGCCCAACAATACTAGGAACAAGTCTTACGTCATTAGAACCAGAACCTTCAATCAGGCTTTACATGGCAAGAGCTTTACCAAAGGTCAGTTCCCTGTTTGAGGGAGTTAGCAATACTCGCACGTCAGTTGGTGCTGTTCCAAAACCAGATGTTTCACGAACCTACATTGCAGTGATGCCAGTAGCTTCTCTGAAATGTTCCATTGGAAAACGTTCCAATACTAAATCGCATGCCCCACCGGACACAACCACTGAAACAGTTGTAACAGACACTGATATTCTGTTGGCTGGACGGGTACATTATTTCGACTGTGCACACTGGGAAGATGCCGGGAACATTTTGGCCAGTTCTTCTCATTCTGAAACAAGCAATCCTGTTATTCTGAAGGCTGCTCTTCACATTCATAATCCAGACTTGATGGAAGGAATTCACGGTTTTGCAACTGCCTGGCATGCTCTGGCCACAAAGTCACACTGTCATGTGCTGCGATCAATACTTCAGACGTACGATGCACTCTCATGGCTGACTGTGGATCCTGTTTCCCGCGACAGACGTTCCTGTTTGCCTGTCCATTTGTATATGTTATGCCAACTTCACGACACTCTTTCTGTTCTGTTGGAAAACCAGTCTTCTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6JPI3	Mediator of RNA polymerase II transcription subunit 13-like OS=Mus musculus OX=10090 GN=Med13l PE=1 SV=2
Q71F56	Mediator of RNA polymerase II transcription subunit 13-like OS=Homo sapiens OX=9606 GN=MED13L PE=1 SV=1
Q5SWW4	Mediator of RNA polymerase II transcription subunit 13 OS=Mus musculus OX=10090 GN=Med13 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003809 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18296 all species →	MID_MedPIWI	MID domain of medPIWI	Domain	Interproscan
PF06333 all species →	Med13_C	Mediator complex subunit 13 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041285 all species →	Domain	MID domain of medPIWI	Interproscan
IPR009401 all species →	Domain	Mediator complex subunit Med13, C-terminal	Interproscan
IPR051139 all species →	Family	Mediator complex subunit 13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48249 all species →	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7387206.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.