Gene detail

Detailed information of KAJ7387616.1 in Desmophyllum pertusum

Genomic Location: MU825873.1:2180984...2206800
NR annotation: KAJ7387616.1, hypothetical protein OS493_000951 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7387616.1

ATGGCGGCCTCCGCTGTAGAGGAAAGCGAAGTCGTGACAACTTTGTCAGTCAATTTGGGAATTTCTAAGGAGGTTATTGCTCAGTTTGCCAGCCTGAATGAAGATGCAGCCTCAGTTCTACTAAAGGTTAAACAGGTTTTGGATGAAAACTCGTCTAAGGATGAAAAATATCGCTCAGACATGAGCACTCTCCGCCGTGCACGTGTGGACGCAGAACAACAGTTCAGCCAGATAGAGAAGCAGCTTATTTCCTGCAATGCTAGACTTGAGTCAGAACAGAAGCAACATGAAAGACTCCAGAAAGAACATGAAGAAACCGTTGCCACACTTGCAGAAAAGCAAAAGAGACTCCAAGAAGTAGAGAGTATAAAGGAAGATGCCTCTACAAATTATTCACGAGTGTCGCGACTCAATGAACAGCTTGAGTCTGAGAAACTAGAACTGTTGTCTGTAGTCGAGAGGAAAAACCAGGAGATAGACAGATTAAATGGAGCCAATTCTACCAAATGTGAGGCCCAGGCCAAACTTGATCAAATTCAAAGTCAGGAAACATCTTTTAAGTTCCGCGAAAAGAGAATTGAGCAAGAAAAGGAGCTCATTGAAAGACAGAATAAATGGCTGAGTGAAGAACTAAAAACCAAAACAGATGAGTTGGTCAAACTTCGCAAGGAAAAGTCTTCTCAAGTATTGGAACTTCAATCACAGTTAGATGAAAGAACGGAAGAGCTTTCTCATCTCAAGACATCAGCAGAAACATTAAAGGAAAGCAATACTGAGCTGAACAACAAGGTGGAAAGCTACATGCACAAGTTAAAGGAGGCTCGTGAGCAGTTAGTTAAGACAGAAGACCACTTTAAAACAGAGCTGGCTTCACAGTCAAAGCTGGCAGTACTTTATAAGGACAGTGCCGATGAAGCAAAGAGAAAAAGTGAGGAATTGTTGACGGCATTTGAAGAACTTCAAAAATTACTGAAAGAATCCAATGAAGGTCGTCTTGATCTTGACAGTAGATTAATGGAACAGGAAAATTCACATGCAGAGAGAGTCAGAGAATTTGAGGAAAGGATCAGTAAATTGGATAAGGAGCTTGAGAATGCCAATGATTTGTTAGCTGCTGCAAGGCAAAGAGGTGCAGCACCTCTAACCCCAGCAGAGTTGAGTACTTTTTCACCAACTGCTGCGGCAACAAGTTCCTTTATGAAGTCTGGAATGACACTTACTCAGATTTATAGCCAATATGTGGAAGTCTCAGATGCATTGCAACAAGAAAAAGATGAGAACATCAGACTTAAACAGTACTTGGATCAGATACTTAAGGAAATTGAAGAGAAGGCTCCTGTCCTTCAGCAACAGAGAAAAGACTTTGAACAGGCATTACATAGTGTGGATCAACTCTCGAGGAGATTAGATTCAGCACTTGTGGAAAATGAAGAATCTAAAGTATTTGCTGAAGAGGCTGCCAAGAAGAGCGAGCATCTGAAGAGAGAAAATGACAGACTGAGGAACCTGTCTGCTGATTTGAGTCAACAGGTCCAGGTACTCTTGAAAGAATGTGAGGAAGCAAGAGGAGGTGTGGTCAGCTCTGAGCCCAGTGTGCACCCCATGTCTAGTACGGAGGTCACTAGCTCATCACAAGTCATCTCTGAACACCTTGTTACTTTTAGGAGTATAGAGGAACTTCAGCAGCAGAATCAGAAGCTGCTGGGAGTTATCAGAGAATTAAGTGAGGAAAAAGAAAAGAGGGAAGGCGATAACATAATTGACGGGTTGCAGAAGAAGTTAGACGGTTCATTGAAGGAAGTGGAAGGTCTAAAGGAATCAAGGGAAAGACAAATGCATATGGTTGAGGCTGTCATTAGGCAGCGCGACATGTACCGTGTCTTGTTAGCCAACAGTGGTCAAACGCCGATACCAACAACTGATGTTGACCTGTCTGTGTTAACGTCCACTCCATTGCTGAAGACTCCTGACAAGTCAGGTGCTGAATTGGAGGAAACTAAAGTGGCACTGAAAGAACTGCAGAGACACTTTGAAACTTACAAGACTGACAGAGTACAAGCTGAGGAGAAATCAAGTGAAAGGCTGGATAAATTACAAAGTGAAAACCTTGAGTTAAATGGCAATAATGCCAGGTTGAAATCTCAGCTGGAGTTTGCTGAGGAGCGGCATGCAATGCTCAAGTCAAACTCAGAAGCCTTCAAGAAGGAAGCCTCCGCTGCTTCTGAGAAGTCGCGGAACTTACAGGTGGCAATAAGCAAGATACAAGCAACTCTTGACAGTGTATCACAGGATATGACTAACACCAAGGAAAAATGTAACAAGCTTGAGGTAATGTGCGAAAACGTGAAAGCTGAAAAAGCTCTGATGAAGGAGTCGGAAGTTCGCTTGATGCAGGAGAACAAAAGCTTGTTGGAACATCAGAAATCCCAAAATGTTCTGGTTACAAATCTTCAGACTTTACAGAATAACCTGGAAAGATCAGAGTTTGAAGCGAGAACAAGACTTGGCTCTCAAGTGGAGACTTTACAGCGTGAGGTGAATCTACTGAAGAGGAAGCAGGAATCTGAAGACAAACACCACAAGAGTGTAATTGGCACATGGGAGAACCGTGTTCAAGAACTGCAGTCACAACTGAATACTGAGATCAAGACACATCAACAGGCCAGAGAACAGCTGCTAACATCAACCAGGGACGTTGATTCAGTACAGCTAAGATGCACCCAAGCTGAAAAACAACTGCAGGCCACCGAGAAACGTTTAGCCGACATTTTAGAGAAAGAAACAGATTCTCTTCAAGAAGCTGAAGAAGAGAGGATTAGAAAAGAGACTACAGAAAAATACACTGTCAAGATTCAAGAATTTGAGTTTAAACTGCACACCACAGAGGCTAAAGTCAAGGGTCTTGAGGAACAGTTACAGCAAGCTAAGCAACATGCAGAACAGTTTAAGTCCATGTCAGAAGCTAATGAATCAGCATTGGGTGACTTAAACAAGACAAGTGATGAATTTAAGCGAACTACAGAGAGTAAACTCCAGACCGCAGAGCAAGATGTCACACAATACAAGTCTCGGGTCACCACTCTTCAAGCCCTGAACCAAGATCTGAATGCGACAAGAGCGAAACTGGCAAGAGAAGCCGAGTCACAGACCAAGAGCTTACGTGACATGTTGAGTAAGGTTAAAGCGGAGTTAGAGGAAGCGTTAAAGAAAACACAGACATCATCTGCAGCTGAACTGACTGCAAAGGAAGAACTTAAGGAACAAGCTCTCTTGGCTACAGAGGCTCAAGATAAATATGAGAGAGAACTTGTCCTTCATGCCAATGATGTGCAAGCTTTGACTTCAGTTAAGGAACAGTTTCAAGAACAGAGCAGCAAATTTCAAGAGATAGAAGACCGTGCTTTGGCAGCTGAACAGAAGCTACAAGAATACACAAGTTCTTGGGAAGATCAGAAAAAGGCCAAGGCTTCAGAGGCAAAGAAAATTGAGGCTCGCTGCGCTGACCTTGTCAATCAGAACTCCACGTTGCATAGTCAGTTAGAAAAGCTTAGTGCCCAGCTGGCTGCCAGTAAACGGTCGCCAGTTCAAATTTCCCTTCCCCAAAAAGAGGGTGTGGCAGCTGAAGGGGGTGAAGAATCTAAAAAGACTGTTGACGAACTTTGGGAGATCATCAGGTTTGTCCGCCGAGAAAAAGAAATTTCCGAGACAAAATGTGAACTATCACAGTCAGAAAGCATTCGCTACCAGCAACGCTGTGAATACTTGAAGGTCAAATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P12270	Nucleoprotein TPR OS=Homo sapiens OX=9606 GN=TPR PE=1 SV=3
F1MA98	Nucleoprotein TPR OS=Rattus norvegicus OX=10116 GN=Tpr PE=1 SV=1
F6ZDS4	Nucleoprotein TPR OS=Mus musculus OX=10090 GN=Tpr PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002126 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07926 all species →	TPR_MLP1_2	TPR/MLP1/MLP2-like protein	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012929 all species →	Domain	Nucleoprotein TPR/MLP1	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18898 all species →	NUCLEOPROTEIN TPR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:1901673 all species →	Biological Process	regulation of mitotic spindle assembly	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7387616.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.