Gene detail

Detailed information of KAJ7387857.1 in Desmophyllum pertusum

Genomic Location: MU825873.1:6396722...6402867
NR annotation: KAJ7387857.1, hypothetical protein OS493_001205 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAJ7387857.1

ATGGCTTCATCGATAATTGCTGGGGTAAACGTCGAGGACATATCAAGACATCTAAACTGCTGCCTTTGTAGAAGGTTGATTCGTAGCCCGAAACTTCTGCCGTGCTTGCATTCATTTTGCCAGCTTTGCGTTCAAGGGCTAGCGGAGAAACTCGCACCGAACGAATATCTGGCCTGTCCGTTATGCAAAACAGACGCGAAAATTTCAAAGGAAGAAGTGGAAAACCTTCCGATAAATTTCTTTTTGGATAACATGTTGGATATTGCGTTGATCAATTCAAGCGACAGAGAACCAGTTCCCTGTTCCAACTGCGATTCGGGGACTGCAGCAGCAACTTCTCGATGCGTGGATTGCGGGGAGTTTCTCTGCGCTAACTGCTACAATGTTCACAAGAGAATCCGTCAAACGAAAGAACACAAGATTTTGACAATCTCCGAGCTGCTCGCCAGTAAGACGGGCGATGACCTGCACAGGCCGGCATTTTGTAGAATTCACCATAACGAACAACTGAAATATTACTGCGAGACTTGCAACGAGGCAGTGTGTAGAGATTGCGTGTTAATTGAGCATCGCCAACACAAATATGATTACATTAAAGACTCGAAAAAGATACAAAAACAGAAAGGAATCGTGGAGAATTTGTTCGAGCAATGCGCTGCGAATATTCCTGTCTTGGACAAATCGATTAACGATATTCAAGGGATTTCTGATACGTTGCGTGGAAGGCTTTCGGCAGTGAAAGCCGAAATACGCGAAGCAACGTTGAAACAGATCAAAGTTCTTAAGGAAAAGGAAAGAAAACTTCTGATGGAGGCGGAGCGAATTCACAACGCGAAATCAACGATTTTAAGGCGGCAAAAAGACCGACTCGAAGAAGACTTCACCAGATTTAAAACCGGTTGCGATTTTTCGGAGCAGGTTTTAAAATACGCGAACGAAGTCGAGCTGCTCTCGCTTAAAACTCACATCACGGACAGGCTAACTGAGTTGAACGAGACCGAACTCGACTGCCGACCGCACGAAAACGCCGAACTCAAATACGAAATGAACAGCAAAGAAGCCGAGACTGTCGTGGCGCAGTCTTTGGGGAGCTTAAAAACTAGCGGGGCACATTTAGTGCTGGAAGATATCGAGATATCACCGCCTTCAACGAATGGAAACATGAGCGATTCGTCGGAGGATTTAACTCAGGCGAGAGAAGCGCCATTATCCGTGGAATTTCGCGACTCTAGCGGAGTCCTTCTTCCTCCGGAGATTATCCATCAAGCTGACGGTCAGTCCTTCACAGCGTATCACCCGTTCTTCAACGGCATTTTCGCATTCTCTGTTTTCGTGCGTGGACAAGCCGTGGAAGGGTTTCCGCTGGACATAAACATCGGTGACATCAGGCCTCGTGTTCGAAGCGCCAAGAAAGCGATCGCGGGGAGTGGGTCCAAGTTTGGCAGGTTAGGTGATCCCCAGGGGGTGGCAGTAAGTGATGAGGGGAACGTGATTGTCAGCGACTCGCGTAATCATCGTCTCCAGGTGTTTGACATGGATGGAAACTTCCGCTTCCTGTTTGGCTCGCTCGGAAGTCGAGATGGTCATTTCCAGTTTCCTAGTGGTGTGGCCGTGAGCGACGAGGGGAACATTGTTGTTGCAGACACTATGAATAATAGAATCCAGATTTTTACGAAAGACGGCAAGTTCGTCAAAAAGTTTGGCAAAGGGTCTATGGAAGGAGAGCGCCTCTATCAACCGTACGGAGTGGCTCTAGACGCACAGGGTCGTATCTTTGTTGTGGACCGTGGTAATGCTCGTGTTATAGTATTCAACCAGGAAGGTCAGATAATATTGACATTCGGTGGTCTTGGCGACGGAAAGGGCCAGTTCAATTGCCCATCAGGCGTAGCGGTGAACAGCAAAGGTCACATGATTATCACCGACTTCGGAAACGATCGCGTTCAGGTGTTCGGCTCGAAAGGTCAGTTTCTGTTCAAGTTCGGAAAGAGTGGTAGGGGTGACGGTGAACTCAATTGGCCCACCGGAGTCACTACGGACGCTGACGATCACATCATCGTGAGTGACTCGTACAATCATCGGATCCAAATATTCAACGAAGACGGCTCGTTCCTGACCCGATTTGGAAGCGACGGAAACAAGAGAGGACAGTTTAAAAGACCCGAGGGAGTGGCTGTGACGAAACAGGGAAATATCGTTGTTGCAGACTGGGGGAATGATAGAATACAGGTTTTCTGA

Transcript

Protein

Uniprot

Uniprot term	Description
O75382	Tripartite motif-containing protein 3 OS=Homo sapiens OX=9606 GN=TRIM3 PE=1 SV=2
Q99PP7	E3 ubiquitin-protein ligase TRIM33 OS=Mus musculus OX=10090 GN=Trim33 PE=1 SV=2
Q56R14	E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis OX=8355 GN=trim33 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR003649	Domain	B-box, C-terminal	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12035	TRIM71; tripartite motif-containing protein 71	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala