Gene detail

Detailed information of KAJ7388031.1 in Desmophyllum pertusum

Genomic Location: MU825726.1:726...2830
NR annotation: KAJ7388031.1, Pre-mRNA-processing-splicing factor 8, partial [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99PV0	Pre-mRNA-processing-splicing factor 8 OS=Mus musculus OX=10090 GN=Prpf8 PE=1 SV=2
Q6P2Q9	Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens OX=9606 GN=PRPF8 PE=1 SV=2
P34369	Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans OX=6239 GN=prp-8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004404 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01398 all species →	JAB	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027652 all species →	Family	Pre-mRNA-processing-splicing factor 8	Interproscan
IPR000555 all species →	Domain	JAB1/MPN/MOV34 metalloenzyme domain	Interproscan
IPR037518 all species →	Domain	MPN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11140 all species →	PRE-MRNA SPLICING FACTOR PRP8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000244 all species →	Biological Process	spliceosomal tri-snRNP complex assembly	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0005682 all species →	Cellular Component	U5 snRNP	Interproscan
GO:0017070 all species →	Molecular Function	U6 snRNA binding	Interproscan
GO:0030619 all species →	Molecular Function	U1 snRNA binding	Interproscan
GO:0030620 all species →	Molecular Function	U2 snRNA binding	Interproscan
GO:0030623 all species →	Molecular Function	U5 snRNA binding	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0097157 all species →	Molecular Function	pre-mRNA intronic binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7388031.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.