Gene detail

Detailed information of KAJ7388869.1 in Desmophyllum pertusum

Genomic Location: MU825448.1:283280...306271
NR annotation: KAJ7388869.1, Sortilin [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7388869.1

ATGCCTGTGGTAGAAACAATTCTTCCTTTCCTTTTTCCAACACAACACGGGTACATGTATGTGCAGTGGAAGTTTGAAAATGAAACGAAACTAAGCATCTCAATGAGTTGGATCGGCAAACGAAATACAGGGGAATCTTCGGCAATGCTTCTTTGGCCACAACAGAGTTTATGTTTCTGTTTAGCAAGCCGTCAGAAACTCTATAAAAGTGATGACTTTGGAAAAACATTCAAACGCATCAATGCTGAAATTTTCAATACACATATCAGAAAGGATAGCGGAATCATGAAAAGCCCAGTCAATCCTAAAAAGGTTTGTTCAATAAGTGATTCTTGTGTCCCACAGTATTCCATTTTCCCATCCACATCTGGCATTGTGATGACTGAAGATGGTGGAGAGAGTTGGAGAAAGATTAAAGTTCCGTTTCAGATCAGTGGACCACTTCTGTTTCATCCGCATGAAGAAAACTGGATCCTGGCCAGGGCTGTGGTTAACGGGATGGCGTACTTATCAAAAGACTTTGGAGTTACCTGGACATTTTTGCAGAGTTATGTACGGAGCTTAAAATGGGGTGCCAGAACAGACGAGAAAGTGGAGAAGGAAGAAAAAACAATTCTCATGACAGTCTCAACTGATGCTCACCACTTCTTGATGGGAGATGCTAACTTGATCAGATCAAGGGATCTCGGAGAGCATTTTAAGTCGATCCACGTTCAGCACGTTTACTCCTTTGGACTTCAAGGACAGTTCCTATTTGTCTCTGTGGACCACAACAAGAATAACAATACACGCATTATGCATGTGTCAAAGAATGGCGGGGATTCCTGGGACCCAGTACAAGTGCCGACAGTCACACCAGAAAGGTTCTATTCCATCTTGGACATGTCTGAAGGATTGATTTTTCTTCATGTTGATGACCCTGGAGATACTGGAAGAGGAGTATTGTACACTTCAGATGCTGATGGAATTGTGTTTAGTGAATCTCTCCGAAACCATGTGTATACAAACTTCTTAGAAGTGAATGACTTTTACAAGGTGGAGTCTATGAGAGGAACATACCTTACAAGCCGCATGAACGATGATAACAGTGTCTCTACATTGATAAGCTATGATCGAGGCGGTGAGTGGAAAACTATTCCCTTGACAAAGGAACAATGCAACGGAGCCAAGTTGGAGCAAAATGAGAAGTGCTCACTCCAGATCCACAACCGTTTCAGTCGCAGTAGGATGGTTGATGTTCCCATGGGCCCTTTGAGTGTGCCGAATGCTGTCGGTATCATTATTGCTCATGGCAACCCAGGTACTGCCTTGAGCAGACACATAGATGTGTGGATGACGCGCAATGGAGGCTACACATGGTATAAGGTTCTGACTGGTCCTCATCATTACTCTATTGGAGATCATGGCAGTTTAATAGTAGCAGTTCCTGCACACTCAGAGTCGACTACCAATTACCTCATGTACTCAGTGAATGAGGGCCGTTGTTGGTTTAAGTACCGTTTTACAGAACACGAATTCCATGTGACTGGGCTGGTCACTGAACCAGGGGCCAAGACAATGAGGTTCAGTTTGTGGGGCTCAACTTTGCCGTCACGAGAGTGGGAGGTCATCACTGTGGACTTTGAAAAAGTGCTGACAAGAGCTTGTAAGGATGGTGTTGATTATGAAAAGTGGGTTCCTCACGGTGAGGGTGCAAACAGTGGATGTCTGCTCGGCAAGAAGGTTTCCCTTCAGAGACCCAAGAAAGAGGAACTTTGTTTTAACGGAGTGGATTACATTCAAAAGCAGACGGCTGAATGTTGCAAGTGCACACAGGCTGACATGGAATGTGATTATGGATACTACCGACGACCAGATACTCCCAAGTGTCTCCGGGACAAGAGAAAGCCTCCTGATCTCTGTATTCACGGCGACACAGAGAAACTAAAAGACAAATTAGGATATCGTCTTGTTCCTGGCGACGTTTGCTGTGGAGGTGACCCAGTAGTGAAAGGATATTTAGACACACATCAGATCTGTAAGAATGCGTCCTGGTACGAGTACGGAATGGACTACAAAAAAGCACATACAGCCAAGAAAGGGCACAGCAGGGTTGTCGTGTTCTTGGTTGTGCCTATGCTGTTGATTGTTATTGCTGCAGCCGCGTACTTCGGCAAGAAGTACTGGGACCTTGGCAAGTTCCGTCCTACCTATCGCTACTCGCAACTGTCACAAGAAGATGAGGAGGATTTAGAAGGGTTAGAAACTAAGTACAACCCCAGACCCAAAGGATTGCGGGCCTATCGGGATTACGACACAAGTGATGACGATGCGGCCATGATAGACTTGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99523	Sortilin OS=Homo sapiens OX=9606 GN=SORT1 PE=1 SV=3
Q6PHU5	Sortilin OS=Mus musculus OX=10090 GN=Sort1 PE=1 SV=1
O54861	Sortilin OS=Rattus norvegicus OX=10116 GN=Sort1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15902 all species →	Sortilin-Vps10	Sortilin, neurotensin receptor 3,	Repeat	Interproscan
PF15901 all species →	Sortilin_C	Sortilin, neurotensin receptor 3, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006581 all species →	Domain	VPS10	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR031778 all species →	Domain	Sortilin, N-terminal	Interproscan
IPR050310 all species →	Family	VPS10-related sortilin family receptors	Interproscan
IPR031777 all species →	Domain	Sortilin, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12106 all species →	SORTILIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006892 all species →	Biological Process	post-Golgi vesicle-mediated transport	Interproscan
GO:0006895 all species →	Biological Process	Golgi to endosome transport	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0016050 all species →	Biological Process	vesicle organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7388869.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.