Gene detail

Detailed information of KAJ7389008.1 in Desmophyllum pertusum

Genomic Location: MU825444.1:370302...416070
NR annotation: KAJ7389008.1, hypothetical protein OS493_034401 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7389008.1

ATGAATGTTAAGCCTGGTTCGGATTTAAGTATCCCTAAGATTTTCCTGAGCCTTGTCTTGCAAGAGATATCTCTAGTTTTGATGAGGCAGCAGTACCATGATGTGATGGAGTTACTGGAGTCCTTTGACAGAATGGCCACAAATACCATGTTCAGAAAATACAAACCAAATGTCCCTCTCCATGGTCATGTCAAACAGTGGTGGAATTATGCAATCACAAGCATCCTTGAGGAAGATGTAAGGAGGAGATTAAGAAATTGGTCATGGACTCACATAAAGGAACACAGGGATCTTTGCAGGCAGTACAAGGACCTGTATAAGAAGAAGTTACTGCAAGACAAACCTTCTGATGCATTACTAAAGGAGCTAGAGGCACTTGAAAGTAAACTAGATGTTTTGAATATCACAATTTGCAGACGCCAGGCTGCTTATGAGGAAGCTGCAGCTTTGAGGAAGAAGAAGATGAAAGCAGAAGAGAAGAAAAGTGGTGGATGGTTTTCAGGTTTCTGGGGCTCCAGTAAAAAGCGCAAGAAGGAGGAGGAAAAATCAGAAATTTTAACTGCAGAGCAGAAAAAAGAAGAACTGGAGAAGTTATACTTTGCTATCGGCTACAGTGATGGAGAAGTCATCACAGCATTTCCTAAGGAGTATGTGGAAAATAAAGTTTTGGTCCATTTGAAGCAAATAAGTGTGGCTTTGAGAGACGATACAGATGCCAAGTCAGTTGATGTTGCAAGACTGAGTTTCCAGGACCTTTTTACAGAGCTTTCTCAAAGACCATCGGCACAAGCAATTAAGGTGACAGCAAAGGTGGACCAGATGAAGATGTTTGGTTCTGCTGCTGCTGCTGATGGAAAGATGCCTCTCATGATAACCTCACAGGATGAAAAAGCAGAAAGCCATCTTGCTCTTTTCACGGCATCCTTTGAGACCAATCCTTTAGATGGAAAGTGTGACCAGAGAGCTGAAGTGTCCTCTCAACCAGTCAAAGTTTGCTACGATGCTAACACAATAGAGCATGTCATCACGTTCTTTCAGCCTCCAAAAGATGTTCATCTTCAGGAGCTCTCAGCAGCAGCATTCTCACGACTGGAAGATCTAAAGTCAGTGTCCAAAGCAAACTTGTCTTATGCAATTGAACATCACAAGATCACAGATATAAATGTTGATGTCAAGTCTCCATTTATCATCATACCAGAGGGAGGCACCTTTAAGAATTCAAGCAATGTCTTGGTGATTGACCTTGGACACCTGAAGATCACTAGTGATCCAGAGCAGGAGAGGATTGTGTCCACCAAGGACCTTAGCTTGGAGGATTTGGAATCAAAGTGTTATGACAAGTTCGATTTCAGACTGGAAGACCTTCAGATTCTCATTGCAAAAACAGGTGAAGACTGGCAAGCTGCAAGGAAGCAGGCCAAATCTGAGATGCATATCCTGGATCCCATGGCAATTGACATGAAGCTTGAGAAGGCATTAAATCCGGATGATATAAGACTTGCACAAATTAAAGTATCTGGAAGTCTTCCTTCTGTTAAAGTTCACGTGTCTGATGAGAAGCTTCTTCAAGTTATCAAGCTTGCCACGAGCATCCCAATACCAGGAGGTGAAACAGCTGTGGATCAAACAGATACCAAACGAGTGGATGTTCCTGGAGATGATCGCCGATATGCTGCAGTGCGGGCTCACAGTGATGTAACGAATTTGGGGACTCTTCAAGGTGGTGCTGAAGAACAAGATGAAGAGGAAGAAGAAGAGATGTTTATGACTCCCCCTGAAACACTACCAGGGGAGTCCAAGCTAGAGCTAGCTAAATTAGAAGCAAAGGAGGCCTTGGCGAAGCAAGTTAAAGTTTCACTTAAGTTTGAAATAGAAGAGATTGCAGTTGATGTCAGCACCATTGATAGCACAGGAAAAATGACCCCTTGTCTTGTACTATCCATCAAAGGCTTGGGCACAAATGTCATAATGCACCCTTGGGACCTTACAGCAAGTGCCTCTTTGTCCTCCTTGGTGTTGCAAGAGATGACCTATGGACCTGATGGAGGTCCTCTTTATCTTGTACAAACCCCTGTTGGAGCAGAGCTGCTGTCAGTCAAATTTGTGAAGGTGGAATCAGACCATCCTGAATACAGCTCAACATTCAAGTCCACCCAGCAGTCTGTTGTTGTGGAATTCTCTTCATTACAAGTAAAACTGCATCAAGAAGCTTTACTAAACATCATCGATCTTTCAACCAAACTGTTGCCTCCCAGTGAAGAGAGCCCACCTCTGCCTGGAGTGTCAGGTGACAGCACAAAGACAGAAGGCCAAGAGGGCAATCAGGCATCTCAGGCAGTTGTACCAAAGGGCAAAAAGAAGAAAGAGGACAAAGATGAAATACAGATTGAAGTAACAGCCAAACTTGGAGGAATTGGCGTTACAGTGACGTCTGTTGACGGTGATTTGAGTCACGTAATTGTTGGAGGATTGTCAGCCTACTGTGTTGTCAGAGACAGCAGGACAGAAGTTATTGCCAGTATGAAAAATTTGTCAGTGCTCGATTCCACTCCTGGTGCTCTCTATCCAAAGATAGTGTCCATTGTGAACCAGGAAGTGTTTAACCTTCAGGTTGTTGCATACAATGGAGCACTTTCTGGTAGCAACTTTAGAAACATGGAAGCTGCTGATGTGAAATTCCAGATGGGAATTGGATGTATTAGAGTTGTCTTCCTTAACAAATTTGTTATGAACCTCTTGGAATTTTTGAACAAGTTCCAAAAAGCAAAGGATGCAATGGAGTATGCCAGAAAAAGTGCAGCTGAGTCAGCCACAGCAACAATTCAGAATCTCCAAACTCAAAGCTCCAGAATAAGCCTGTCTGTGTCCATCCAAGCACCTCTGATAGTCATCCCTGTCAGTTCAACATCTCATGATGCATTGGTTGCAAACCTTGGTCACCTCAGTGTGGCAAATACTTTCAATTTGGCACATGATGGGGAGGATCCTGGTGGAAGTGATGCTGTTGTTGTAGACAACATGGTGGTGGAGCTTAGTTCTGTGCAATTATCGAGGGCTGTAATGACAGATGGAGAAAACATAGGAGCTACCCGTCTTGTCCTAGAACCAGCAAGTCTAGCAGTATATGTAGCACGCAACCTATCTCCTTGGTACCATGATGTACCAGATATTGATGTTATGGGGAGGCTGCATGCTGTCAAGTTGTGTGCTGGTGAAGATGACATCAGAACTATACTGGGAATCTTGTTCCAGAACCTTAGTGAAGGAGTCACTCCTCCTCAGATAGTTGCAGAAGAGATCAGTCCCATTGCTCAGCAAGCGCTTGATTTGGAAGTTGCCAGTAAGAGCCTCAGTGTTGCAGCACCAGTTACAAGTGAAGACGTGTGGGACTCAGTTAAGTTTTCGTTTAAGATTGAAGAAGTTTCTGCTGCAGTGTTCTGGAAGGAAAGTGCTAAGCCGTCAGGCAACAAGTCCTCCAGAGAGCCAGACTGCTGTCTGGGACAGTTCTCACTTGTTCAAGTAGCGGCTTCAGGAAAAATCAGGTCCAACTCCGCAATAAGTGCCAATGTGACATTAGAGAGTTGTATTCTTGATGACAAAAGACCGCAGAGTGAGCAGGGAGTTACAAGGATGATTGAGAGGTTTGATGGAGGATCAAGTAAAGTAAAGAACATGATAGATATCCAGTTCCAGCAATCTGCTACTCAAGACAAAGCAATTGTGATGGAGATACAGAGTTTCCATGTGGTAGCGAATCTGGAGTTTCTATTGGTTCTGTCCAACGTGTTCATGTCTGCATTAGCGACTGATGAATCAGTGAATAAGACACTACCGGCCCCTCCACAGTCCTCCCAGGCAGTAGCAACTAAACACAGCAAGTCTGCCACAGTTAAGACTACTGATGAAGAACCTCCACAAATCACCGTTCAGATCTCCATCAAAGACCCAGAGATTGTCCTGTTAGCAGATGCAAGAGACAAGGACACTAATGCTTTGTTCTTGAAGAATGCAATTGATTTCCACTTTGTCCAGGGTCATGGCCAGCAAAAGATGTCAGGTTCTGTTTCAGATATTGTTATCACCTCCGCAGCTTTTGACAAGGAGAGACGAGATTCAACTAAGTCAAGGGTTCTCCAGCTGTCCCAGATCTCGCTTGTCAGCTCTGTACCAGAAGGCAGTAGCATGCAAGTTGACATATCAACTGGAATGACTTACATTCATGTGTCACCACCCACGATAAGGACATTGACAGCTTGCCTTATGTCATTAGCTCCAGCCAAGAGTGAAGACGACGAAAATAAATCAACTGAAAATGCTGTAGAACTGTGGAGTGAAAAGCCAATCACGACTGAGGATAGATGGTATTTATCTCCAGTTCCAGAAGACCAACTAGTCCCTGGTAGACGTGTACTGGCCCGATCGTTGGCCAACCAGAGGAATTACGATGCAGGATTTATTTACACTGCTATGGACGTCATGATTTATGTTCAGTTTGATAACTCCATGACCTGGTTCTATGACACAAATGACATTGCTGCCATCGTCATTGACAAGAATCCTGACCCTAAAGATGTAGTTGTTGGTACACAAGTGGTGGCCAAGCGTCCAAACGAATCATCACACGTTGAGGGGAAAATTATTGAAATAAACGAGGAGGATGGGAAGATGGCATATCGGATTGACTTTTGGGATGGTGTGGGAAACTGGAACACTTTGGAACAGATTCGCGTTCTCACCACCACCAAGCCTGGAGTTCCAAAAGGGCAAATTGCAGTGTCAACCATCGTATTTGTCAGAGGCAAAGATGACATGTACAGCAAAGGTTTTATATCCAGCAAAACATACACCAAGCTGGTGATACGAGTCTATGGCGAATTGATAGGCCTTAGCATAGTAGATGCAAACGACAGTGCTGCAGTTGTACCAGATGTTGTCCCCGATCCAGCGTCTTTAACTGTTGGTAGAACAGTTATTGCCACATATGACACTTTTTTGTGGGAGGCTGGAAATATCGTTCAAATAAGGAAATTGGATGAGACAGGACAATACATTTATCGTGTCAGGTTCATTTCTGGTGGAGACACGTGGGTTTTCAACATCAACAACATCCGCATCCTGATGACAAGGAAACCTAAAGTTCCAGAAGGTGTGTTAGACGTTGGTACAGTGGTGTGGGCACATACTTCCAAAATACGGTACTACAAGGGATTTGTCTCGTACAAGGGAACCAAATTACATGTTGATTTGTATGATGGAGACAAATTTCTCTACGAAATGAAGGACGCGTCACACAGGGTCATCCCTGATGTTCCACCAAAAGCTGCAGATATCAAACCTGGGACAAGGGTGATAGCCAATTACAAGAACAGACCACGGTATTTCAGTTCTACAGTGATGGAAATAGATGCCTCTGACCCAAGTGAACCAAAGTATCATCTAAAGTTTGATGATGGAGATGAGATATGGGATTCGCTTTACCAGTTGAGACTTCTACCCAAAGAGGTTCAAGTTGGAGGCGAGGAGAAGTCTCCAGACCACATTGATGCTAATGAGGCTGGGAACAGTAAGGCAGAATTGTTGGTGTTTGAAATGGAAGGATTTGACATCAAGTTGGAGGGTATGTTTGGTGGTCAAGTCATTCCATTGCTATCTGTTGACGGATCCATACAAGGCGAAGTGAAGAATTGGTCTTCAGCTTTGTCAGTGCATGCAGGAGTTGGCATTATTGGGAACTACTTTAACGAGAATGTGTCTGAATGGGAGCCTCTCATTGAACCAGTAGAAGATGAACATTCTGCTTATCGACATTGGGAACTCAATCTTGATGTTTCATTGGCAAATGGTGGTAGTGATAACAGCAATTTAGATGACAGTTCTGAAGCAGCCATGTCTCTGGCAGTTCATTCAAAAGATGAACTACAGCTGACTGTGACCAAAACGTGTCTGGATGTCTTCACTAAGCTTGGAGCAGCTTTTAAAGAAGCTGTTACTCTGGAAGGCACAGGAGTGATAGCTCTGGAAGACATTCCACCCTTTCAAATATGGAATGAGCTTGGCATGGAAGTCAAGATTCGACCAGGAAACAAGTTTGAGAGTCCAGCTGGTGTTGGTCAAGATGGAATGGTTGCAATCCACCCTGGTCAAAGCCTTTCCCTTCGATTTGGCAAAGGACTCGATAGAAAAAGCAGCAGATATGAGAGAAGTAGTAGTGCCTCTGGTGTCGGACCCAGCATTGGTATCGAGGTGCAAGGCTATCATGAGCTGAAGACCATTTCTGTAAAACAGGCACGAGTTATCTTGCACAATGCCATTCCAAAAAAGTTGGTAGAAAGCATCATAATAATGCCAGAAATGAGCACCATAAATGAAATGGTACTGGTAACGGATCTTGACCCCGATGAGCTTCTTGCAGGATTAATTGTATCAGTTGTTGTCCAAGTTGAGAGTGGAGATGGGCAGAAAACAGTAACCATAAGGTCACCATTACAGGTTAACAATCACTTTCCAATCCCAATGGATTTGTTGTGCAAGAAAGAAGAACAATTTTCCCGGATCACAACAATTCAACCTGACAGTCTCTTCAATGTTCCTCTTATATTGGCTCACAAGGCTGGACTCTACCTCAGACCTGCAGGATTTGGGTATGGAGTGAGTACTAGCCCCTTGTTGTGGAACAAGCTGGCATCTGAAGGTCATTCGTCCATTGGCTGCCCACCACCAGCTGGCGAGGGTCCACCTTTTCATATTGAGGTTGTTTGTGAGCAAGTGTCATTTAGTTCAGTTAATGGATCCTTGGAACATGCGCCTAATTACATCCTCCACATCTACCCACCAGCTGTTCTTCACAACTATTTGCCTTATAATATTCACTATGCATCACAAGGTTTGCCTGCTGTTGAACTCAAGGGTGGTGACAAGTGGCCTTTGTTTTCTGTCAGTCTCTCTAAAAGAGTCATCCTTTATCTCCAGGTTGACAACTATCAACGCAGCATGTGGAGAGGACAAATTGACCTGTCAAAGGGAATGGATGAGCTCACAACATTCACATTACAGTCAACTCAGGTGGCAGCTTATGGAAAGTACCTGGAGCTGGGAGTGTTTGCCACATTTGAAGGCACAATGAATATCACGCTGTACAGTCCTTACTGGATGGTTAACAAGACTGACCTTTACCTTGAATACATGGCTTCTGATGACGAGACCGTCATCCCTCATCCAGCTTCCTTGACTGAGCCAGTAATGTTCTCGTACCGTGGGAAAGGAAATCTCTTTGCCAAGAAGACGGCCCGTGTTCGTCTAGCATCTGCTGAATGGTCCAACAAGTTTTCTCTTGATGCGGTAGGCAGTGGTGGAGCTATTAAAGTCAAGAAAGATGGAAAACTGCACGAGGTTGGTATGCAGATTTCCTTGTCTTACTTCAGTTTAACCAAGATAGTGGAATTCACACCCTTCCACCTGATAAACAACCACACAGAGTACACCGTGTCACTGTCAGACTCACCAAGCCAAGAGTCCGCCTGGGTAACAGTACAACCAGGAGAGTGCGTACCATTCTGGCCAGTTTCATGTCCGTCTAAGGATCTGACCATCAGGGTTGATAACAGTAAAGAAGTGTCACCAAGCTTTCACTTCCAACCGATGTCACAGTGCTGCTGA

Protein

KAJ7389008.1

MNVKPGSDLSIPKIFLSLVLQEISLVLMRQQYHDVMELLESFDRMATNTMFRKYKPNVPLHGHVKQWWNYAITSILEEDVRRRLRNWSWTHIKEHRDLCRQYKDLYKKKLLQDKPSDALLKELEALESKLDVLNITICRRQAAYEEAAALRKKKMKAEEKKSGGWFSGFWGSSKKRKKEEEKSEILTAEQKKEELEKLYFAIGYSDGEVITAFPKEYVENKVLVHLKQISVALRDDTDAKSVDVARLSFQDLFTELSQRPSAQAIKVTAKVDQMKMFGSAAAADGKMPLMITSQDEKAESHLALFTASFETNPLDGKCDQRAEVSSQPVKVCYDANTIEHVITFFQPPKDVHLQELSAAAFSRLEDLKSVSKANLSYAIEHHKITDINVDVKSPFIIIPEGGTFKNSSNVLVIDLGHLKITSDPEQERIVSTKDLSLEDLESKCYDKFDFRLEDLQILIAKTGEDWQAARKQAKSEMHILDPMAIDMKLEKALNPDDIRLAQIKVSGSLPSVKVHVSDEKLLQVIKLATSIPIPGGETAVDQTDTKRVDVPGDDRRYAAVRAHSDVTNLGTLQGGAEEQDEEEEEEMFMTPPETLPGESKLELAKLEAKEALAKQVKVSLKFEIEEIAVDVSTIDSTGKMTPCLVLSIKGLGTNVIMHPWDLTASASLSSLVLQEMTYGPDGGPLYLVQTPVGAELLSVKFVKVESDHPEYSSTFKSTQQSVVVEFSSLQVKLHQEALLNIIDLSTKLLPPSEESPPLPGVSGDSTKTEGQEGNQASQAVVPKGKKKKEDKDEIQIEVTAKLGGIGVTVTSVDGDLSHVIVGGLSAYCVVRDSRTEVIASMKNLSVLDSTPGALYPKIVSIVNQEVFNLQVVAYNGALSGSNFRNMEAADVKFQMGIGCIRVVFLNKFVMNLLEFLNKFQKAKDAMEYARKSAAESATATIQNLQTQSSRISLSVSIQAPLIVIPVSSTSHDALVANLGHLSVANTFNLAHDGEDPGGSDAVVVDNMVVELSSVQLSRAVMTDGENIGATRLVLEPASLAVYVARNLSPWYHDVPDIDVMGRLHAVKLCAGEDDIRTILGILFQNLSEGVTPPQIVAEEISPIAQQALDLEVASKSLSVAAPVTSEDVWDSVKFSFKIEEVSAAVFWKESAKPSGNKSSREPDCCLGQFSLVQVAASGKIRSNSAISANVTLESCILDDKRPQSEQGVTRMIERFDGGSSKVKNMIDIQFQQSATQDKAIVMEIQSFHVVANLEFLLVLSNVFMSALATDESVNKTLPAPPQSSQAVATKHSKSATVKTTDEEPPQITVQISIKDPEIVLLADARDKDTNALFLKNAIDFHFVQGHGQQKMSGSVSDIVITSAAFDKERRDSTKSRVLQLSQISLVSSVPEGSSMQVDISTGMTYIHVSPPTIRTLTACLMSLAPAKSEDDENKSTENAVELWSEKPITTEDRWYLSPVPEDQLVPGRRVLARSLANQRNYDAGFIYTAMDVMIYVQFDNSMTWFYDTNDIAAIVIDKNPDPKDVVVGTQVVAKRPNESSHVEGKIIEINEEDGKMAYRIDFWDGVGNWNTLEQIRVLTTTKPGVPKGQIAVSTIVFVRGKDDMYSKGFISSKTYTKLVIRVYGELIGLSIVDANDSAAVVPDVVPDPASLTVGRTVIATYDTFLWEAGNIVQIRKLDETGQYIYRVRFISGGDTWVFNINNIRILMTRKPKVPEGVLDVGTVVWAHTSKIRYYKGFVSYKGTKLHVDLYDGDKFLYEMKDASHRVIPDVPPKAADIKPGTRVIANYKNRPRYFSSTVMEIDASDPSEPKYHLKFDDGDEIWDSLYQLRLLPKEVQVGGEEKSPDHIDANEAGNSKAELLVFEMEGFDIKLEGMFGGQVIPLLSVDGSIQGEVKNWSSALSVHAGVGIIGNYFNENVSEWEPLIEPVEDEHSAYRHWELNLDVSLANGGSDNSNLDDSSEAAMSLAVHSKDELQLTVTKTCLDVFTKLGAAFKEAVTLEGTGVIALEDIPPFQIWNELGMEVKIRPGNKFESPAGVGQDGMVAIHPGQSLSLRFGKGLDRKSSRYERSSSASGVGPSIGIEVQGYHELKTISVKQARVILHNAIPKKLVESIIIMPEMSTINEMVLVTDLDPDELLAGLIVSVVVQVESGDGQKTVTIRSPLQVNNHFPIPMDLLCKKEEQFSRITTIQPDSLFNVPLILAHKAGLYLRPAGFGYGVSTSPLLWNKLASEGHSSIGCPPPAGEGPPFHIEVVCEQVSFSSVNGSLEHAPNYILHIYPPAVLHNYLPYNIHYASQGLPAVELKGGDKWPLFSVSLSKRVILYLQVDNYQRSMWRGQIDLSKGMDELTTFTLQSTQVAAYGKYLELGVFATFEGTMNITLYSPYWMVNKTDLYLEYMASDDETVIPHPASLTEPVMFSYRGKGNLFAKKTARVRLASAEWSNKFSLDAVGSGGAIKVKKDGKLHEVGMQISLSYFSLTKIVEFTPFHLINNHTEYTVSLSDSPSQESAWVTVQPGECVPFWPVSCPSKDLTIRVDNSKEVSPSFHFQPMSQCC

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BX70	Intermembrane lipid transfer protein VPS13C OS=Mus musculus OX=10090 GN=Vps13c PE=1 SV=2
Q709C8	Intermembrane lipid transfer protein VPS13C OS=Homo sapiens OX=9606 GN=VPS13C PE=1 SV=1
Q96RL7	Intermembrane lipid transfer protein VPS13A OS=Homo sapiens OX=9606 GN=VPS13A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000767 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06650 all species →	VPS13_VAB	Vacuolar-sorting associated protein 13, adaptor binding domain	Domain	Interproscan
PF16910 all species →	VPS13_mid_rpt	VPS13, central RBG modules	Repeat	Interproscan
PF16908 all species →	VPS13_ext_chorein	Vacuolar sorting-associated protein 13, extended-chorein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009543 all species →	Domain	Vacuolar protein sorting-associated protein 13, VPS13 adaptor binding domain	Interproscan
IPR031642 all species →	Domain	VPS13, middle RBG modules	Interproscan
IPR026847 all species →	Family	Vacuolar protein sorting-associated protein 13	Interproscan
IPR031646 all species →	Domain	Vacuolar protein sorting-associated protein 13, extended chorein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16166 all species →	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006623 all species →	Biological Process	protein targeting to vacuole	Interproscan
GO:0019898 all species →	Cellular Component	extrinsic component of membrane	Interproscan
GO:0045053 all species →	Biological Process	protein retention in Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7389008.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Desmophyllum pertusum tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Desmophyllum pertusum, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →