Gene detail

Detailed information of KAJ7389516.1 in Desmophyllum pertusum

Genomic Location: MU825430.1:334934...360408
NR annotation: KAJ7389516.1, Swi SNF matrix associated, actin dependent regulator of chromatin [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7389516.1

ATGGGACTTGGAAAAACCCTCCAAGCAATAAGCATTGCATATTATTACCGAGATGTCTGGCCGCTGTTGATCGTGGCACCATCTTCTGTAAAGTTCTCTTGGATTGATGAAATTGAGAAATGGCTACCTGACGTTGAACCCCATAACTTGAACCTAATTAGATCTGGCAGTGATATCAGCAACCTTGGCAAAGCTATGATTCATGTTGTTGGGTATGGCCTGTTGTCACGCCTAAGCACCTCTAAACTCTTACTGGAAGCCCTGGAAAGCCACAAGTTTAATATTGTTATAGTAGATGAATCACATTACTTGAAGACCAAACGTGCCGCCCGCACACAGCGACTCCATCAACTGTGCAAGAAGGCCCCGCATGCAATTCTGTTGAGTGGGACACCGTCACTTGCACGACCAAGGGAGCTGTATTTCCAGCTTGACATAGTTTGTCCAGGGAAGTTTGGCAATTTCAACAATTTTGTTCAACATTATTGTGATGCACATGATGTTTACTTTCGAGGAGCACGTCATTTTGACACCAGTGGTGCGTCTAACCTAAATGAACTTTATTACCTTCTGAAGACACATGTTATGATACGGAGACTTAAGAAAGAGGTTTTGACGCAGCTGCCACCAAAGAGAAGACAAAAAGTGATTTTTGACATCTCAGAATCTGGCACCAGTCAATACAAGAAGGAGCTGGAACAAACGATGAAAGACTTCAAGAAATGCTCTGCCATTCTGAGAGGCGATGCTGAAGATCCAAGCATCAAGTCACCTATGTTTGAAATGAACCGACTATCAAGTCAACTTTATCGCTATACTGGCCTTGTAAAGGATTTAGTTCGTTCATTTCAAACTGACCCCCAAGTACGCATTGCAGCCCTGTCCATTGAAGCTGCTTCTTTTGGCCTCACTCTAACTGCAGCCCATCATGTAGTTTTTGCCGAGCTTTACCACACCCCAGGTGTGATTATTCAGGCAGAAGACAGAGCACACAGGATAGGACAGACATTACCTGTTAATGTTCACTATCTGATTGCACAAGGCACTGTGGATGAGATTCTTTGGTCTATGATCAGACGCAAGGTCTATGTCACCAGTAGCACTCTTGATGGAGAATGTAAAGAGCTTACAGCAGATGATGCAGACGAGGACCAGAGTCGACAATTGTCTGCGTGTGCTGCCTGGGTACAAGACCAGGAAGAAGATGCTGACGGCCTGGAGGAGTTTGTTATGGAGCAGTGCCACATGCATGAAACTGGAGGTAACTTCAAAACATTTTGTTCTATCATAGCTTTCATCAAAATCTCTAAAAAAGGATCAGAGCCAAAGAGACCTTCGTTCGTTTTTGCCGCAACTCCAAGTGCATCACAGTCAAACTCTTTGGAGCATAAGATTGGACATCAACATGAAGACGGTACTAGAAAGAACATTGTGGATCAGGGTGTGGCCACGACATCCAGGGATACGGTAGTATCTGTGTTAGACAGTGACGAGGACGATTTCTCAGCGTGGGATGATGTGGATGACGACATCCTGATTTCAGAAGGTACATTTAGGCTGCGTTCGTATCTGATTCACTGGAAATCGTGGAGCAGACGACGCTTGACAAACACAATCAACCTCGTGAAGAGAATCTACAAGAGGCTGACAATCTTGAAACTGGACTCAAACCTGTTGAAACTGGACCAAAAACTGTTGAAACTGGACTCAAACCCGTTGAAACTGGACTCAAACCTGTCGAAAACTAGACTCAAACCTGTTGAAACTGGACTCAAACCTGTCGAAATTGGACTCAAACCTGTTGAAACTGGTCTCAAACCAGTTGAAACTGGACTAAAACCTGTCGAAACTGGACTCAAACCTGTTGAAACTGGACTCAAACCTGTAGCAAAGCTGGAGCAATCACTCGAAGAGGAGCAATGTCCACTTAAACCGAAAAGGTTAAAGTTCAAGAAAGTGAAAGATGGCAAGCTTTCTTTCTCGGGAAGCAAAAACTACACTAAGCTTCCTCGCAAGGAAAGCAACTGTATAAGTCCTTTGAAATTTGTTGGAAATTATCCCGAGTCGGAATCACAGACGTTGCGAAGCTATTTAGATGAGGATTGCGATCCTGTAACTGTCAAAGCAGAGCAGAGAGATGATTCAAGCGAGGTTGTCTGTAGTAGTGACGATTCTAGGCAAAAGGACCGTGCTTTTTTCGCATCCTTACAGGACGCTGATATAGAATGTGTTGCAGTTGTTTGTAAAAGGACGACAAACATATTACAAAACAAATCCCACATTTTAGATGACAGTGCTTGTGAAATTACAAAACAAGAAGCAAATTATGGAATTGATGATTGTCAAGTTGAAGAAAGACAAGACCTCGAGAAAGAAGCGGCTTCAAATGCAATTAAAGTTGACATGTTTGACACACCAGGGGAGGCCTTAGAGAGCGTCATTCCCAAAGCTAAAAGCTTGCCCGATCCCAGTTGCAAGCTGGAAAGTGAAGAAGAAAGGACCTCTCCTAGAAAGTCCTATTCCGGACAGAGCCATTGTTTAGATGGAAACTGCCAACAGATGGAGACAGATGAAGTAGGAAATTGCCGTCCAAGTTGTAACCAAGGACAGGGACGTTTGAGTAGAGGGGTTTGCACCAAGGATGACGTCTTAAATCAGATTGACTTTGTTACTAAAAATAAAGATGACCTTGTCCCAATGAGCGCACTCACCAAGACCAGTGGTGGAAGCATTTCCAATGATGTTGAATCTACCCGTATTGACGGCGAGGACATGGTCACAGATAAAGGCGATGTGGGTCAGAGTAGCAAACGTCCAGGAGATGGGAGTGAAGATAATTGTTGTAATATGCCATCATTAGAAGAAAACGTAGGAAGCAGTAGTGTTCACAATTCCTCAAATTCAGCAAAGTGCTTCTCGCGGAATGATAAGGAAAAATCGCAGAATAAAACAGATGAGGTGGAAGCCAACGTGGTATCTGTTTGCATTGACGATGATTCCTCTGATGATTTTCAAGTTTCCAGCATCAGGAATACCCAGGTGGCTCCACTACCAGCTGCACAGAAACCAAGCAAGGCAAAAAAACGAAAGGCCACTAAGAAATCCAAGAACAAAACAGCAACTGGAGGAGTTAGGAATCGTAATAATGTCAAGAAGCCGCCTGTTAACTGGTCTTGCAGCGCTTGTACTTTTATTAATGATGGGCAGCTGTTGGAATGTTCCGTTTGCCTCACACCACGTGCTACAACTGAGGACGAGAAAACGTGCATTCCTAAAAGTACAGATTTGGGTTTTGAGATTTCGATTGAGCAAAGTTGCGATGATGTTGAAATGGTAGAAGATGCAGGTGTTTTAGAAGACTTTAAAAGTATCAATTCCGTTATTGAAAATGGTGGCATAAATGCTACGATAGTGAAACACGACATGTTATTAGACGGTATCGATGGGTCAGCTAGTAATGACACTGGGCATACTGCAGAATTACCCGATAGCACTATAGTCGTCCATGGCTTGTCAACTGAGTCAAAGGGAACACCGACAGACGTGTCGAAGACAACTGATAACTCCACTATTCCCAAGCAGGAAACAGCTGTTGATGTTTCTGACAATAGTCAGGTCGTTGAGCCTGCCTTGCCTCCTTGGACTTGCACCGCTTGCACGTTCTTGAACATGTCACAAATGATTGAATGCTCAATATGTATGACTCCTAGAAGACGAAGTCAGAGGCTGAGTGCAACTAAGACTACATGTACATTTACATGCACAGTGGCAGCCAAAGGATGGGAGAAGGATTGCATTAACAAGAACAAATCAAGCAAGAGAAGGCGATGGGAAGGAGACAAGATGAAGAAAGACGACAACCCACAAGACATAGGAGTAAACATGGTTAGTAGTTCATTTACATGTATCGATGAGTCCAGTGCCGGCAACAGCATATCACATTGTGATCATGACATTTCAATAGCAGACAATGATAGCTTGACACCAGAACCTGTGGAGTCAACCCATGATACAGACAGTGTTCAGGCACATGGTGGTTTACAAGTAGACTCGAGTGAAGATAGTTCTGGTGGCATTAAGCCTAAGCCGCGGAAACGTCTTAGACTCGAAGAGGTTGAAGCGGACAGCAGTATGACCGAGGACATTGGCGATTTTTCAGATGATTCAGATGTTGTATGCGACAACAGAACATTCACATGTCCTTCATCAGTTTCTTCTTCTACAGCTCAGAGAGAGTCGGTATCGGATATACCATTTGATGGCAAAGACATAACTAGTTCAGACGACTGTGTTCTTTCCACAGATGAGGATAAAAAAGGAGCCACAACTCATCAAAAACATGCACTCAACAACTGTCAAATTGACAAGAATGATTTCGAGGTATATTGTGACATATCCGGTGTTAAAGTTTCAGATGACGTTGAAGCTATTGACTGCAGTGCAGTACCTTTACCTGTGTCCTCTTCTGAAGTTACCTTTAGTGCAAATTCGTCACCACGTTTACAGTCTGGTAGCAAAGTGGTGGAAAATCTCGACGAATTGAAAGCCGCCGCGGAAGCAGTGTTCATGTCTGAATGGGAAGATGACGATGAGTGGTGGGAAGAAGCAGAAAGTTGTTCTGGGCAGAGCTCCTTTCCTTCCAGTAGTGAAACAGCATCTGTTAGTCCAACAGTTCCGAGCCCAGGGTTCACAAAATGCTCGGATCTTTATTCTGTCACTGAGCTAAAGAACAAGCTACAAACAACTCCTGAGGCATGCACCACAACAGCTGTAGACAATGTTCAACAGGTTCAACTTGCCGAAGGTAATCCTGACAACGACATGTCATCATCGTTGGCAAATCAATATACATTTATGCCTGATACTGCTCCAGTAATAGAAGAAGAGGAGGCAGAGGAACCAGAAGATGTTCCAGAAGCCATGAAGTTGAAGTTTTGTTTGAGTCTTTATACCGAACGGGTATATTTGTACAACGAGGACGACAGACCGCTTGGAGTTAATTTCTGCATGTCGGACGTGAAGAACTGCAACATGGACGATTTGCCCGCCATCCTTCGTCACGATGAAAATCTGAGACAAGTGAAAAGGTTTCTTGGCTTGTGGAATAGGATGGGACAAGGGAAGAAGCGAGTCCTTCGCAAATCAGCGCTTGTATTTGATAATCCTTTGGAAGCCTACGAATGTGCAAGGAAGGAAACTCAAATTCAAAACATCATCGATACCGCAGGAGAAATTGGAGGAAAGGTTCGTGTAGTTAAGAGACCAAGGATTACAGCGAAGAGAAGAAACAGAAGAAATGATCGCAGCAAGGAGACAAACAGCGGTCAGTCATCACTCACTCCTTCCCTGTCGGGAAGCGCAGCATCTACTAACACCACCCAAGAGCGTCCCTCAAGCACAGCATCCAAGGACAAGACTTGCTACCAAGCCGTGAGGGCTGATGGGATACCATTATGTCTGTCCTGCTCGGGTCCAGTGGATTTTGTGGACAAAATGAAATGCTCTGATTGGGATGCAAGATTTTGTTCGTATGATTGCAAAAAAGAATACCAGGTTCGTGTCAGCGGTACAGCTGCAAGGAGGGCGCTGTTTGAATCAGAACGAGGCATCTGCCAGCTGTGTCTGTTGGATGCTCACAGCTTGTACCACAACATCACTGTGCTGGACGTCAGAGATCGGCCAGCATTCTTAGCGCAGACTCCTTATTCGTCACTGCCGCAACAGATGTTGAAGAAAATGGTTATGGATCCAAAAGAAGGAATGTTCTGGGAGGCGGACCACATTACACCCGTGTCTGAGGGGGGCGGGGAGTGTGCATTGGACAACTACAGGACCCTGTGCGTCATGTGCCACAGGAAGGCCACTGGTGAATTGAACATGAGGCTGAAACAACGCAGAGTTCTACAACACGCTGCTGGGTATGCAGATATATCCACATTCTTTCGACCACTGAACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E1BB03	DNA annealing helicase and endonuclease ZRANB3 OS=Bos taurus OX=9913 GN=ZRANB3 PE=3 SV=3
Q6NZP1	DNA annealing helicase and endonuclease ZRANB3 OS=Mus musculus OX=10090 GN=Zranb3 PE=1 SV=1
Q5FWF4	DNA annealing helicase and endonuclease ZRANB3 OS=Homo sapiens OX=9606 GN=ZRANB3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001424 (this species only)
Ubiquitin family	UBD\|ZnF\|NZF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF01844 all species →	HNH	HNH endonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002711 all species →	Domain	HNH endonuclease	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR003615 all species →	Domain	HNH nuclease	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45766 all species →	DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0031297 all species →	Biological Process	replication fork processing	Interproscan
GO:0048478 all species →	Biological Process	obsolete replication fork protection	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7389516.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.