Gene detail

Detailed information of KAJ7389661.1 in Desmophyllum pertusum

Genomic Location: MU825426.1:172836...176842
NR annotation: KAJ7389661.1, 3-ketoacyl-CoA thiolase with broad chain length specificity [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7389661.1

ATGGCGGGGACTTCGACTCGTAAAGAAGGCGAAATTGTGCAAATTCTAGAAGACATTTCTTCTGCTAAGGAGATTGAAAACAGTTATCAGTGCATCGAAATTAAAGATATACAGCAAGAGATAGATTTTTCCGCATGCTTTGTGAAAGGAGTATTAACTACTGTCAATCCAAGTATTGTAACATCCAGAGGCTGGACAATGAAAGTGTCCATCAAAGATGTTGGCGCACACAACCGATCAGGCTCTTGTAATGATTCAGATCCACAAGATGTCATCTCGGTCTTCTTGAAAGGAAAGTTTGTTGAGAAGTGCAAGATAGTGAAGGAAAAAGATTTGCTCATGATTACAGGAGCACAGCTTGAGAGGTCATCCAGAGAAGGGCATCAGTTCAATATTATGGCAGATGAAAGCAATGACGCTCTCAAAATATGGATAACGCAAGACCCTGAAAACAAGAATAAAGCAATTGGCAATATTCATGATGAAGCAGTTCAGAAACCGTTACCTGCAGAAACTACAGGCAATTTAATTATTTATTGTTATTTTTTTCTGTATACATGGGTCTCCATTGATAACAGTCCTGCGACTGAAGGTGATGAACCACCAAGCAAAAGAAGCAGGCTTGTCTTACAACCTAAACCTGCATTGATTGTATACACAAAACTAGCAGACTTGAAAGTCAACACCATTGTCAATGTGTTTGGTGTGGTGAAGTTCTTTAAGAGTCCCTTCAAGACCAGAGGTTCTGATTTTGTGTGTACTTTGAGCTTAGTCGATCCTTCTCTGGATTCTCTGGAAGAAAGTTTTAAGTTGGTGCTCTTTTCCAAGTCAAAAGAAAGGTTGCCGTCGGTTAGGTCAATGGGAGACATTGTTTGCTTTCATCATATTGCTGTTGGGGAATATCAAGGAGGGTTGCAAGGAAAGTTCCTCCCAGAATCCTCTTGGCTTGTGTTTGAGATAGATAGCATGGTTACATCCCAAGCAAGAGCATCTTCGTCCAAATCATACAATCTGACAGACCATGAGAAAGACATCATTGAAGAATTAAGGTCATGGGCATCGCAAAAGGAAACTCTCAACAAAAAGTTTGCCATTACTAACTTGAAAGACTTAAATACAAGCCACACATTCATCAATCTGCTTTGCCAAGTTGTGTCAAAGAGTAAGACAGTGATTGGTGATGGCATTGCACTGACACTGTGGGATGGATCAGTCCCGTCATGTCAGTCAATACTAGTTGAACCCATCAGTGAAGAGGGACAGATTACATCAGATGAGCTAATGCAGAAGGCAGCTAACAAGTGTGTACAAGTGTTTCTTTATGAAAACCATGTTGAGGGTGATGCCAGTAAACTTGGTCCTGGTGATTTTGTTTGTATCAGGAATGTTCATATGATCCTGGAAAGCACTGTATTGACAACAAATGAAACCAAGTCACGCCCTCAAGTAACCCTGACAGTTCATAGAGGTACAATATGTGGGCGCGGTGTGGAAATGCTGTCAGCTAGTGATCCAGTGGTCTCCTTAAGCACAACCATGAAATTAATCTCAGAAGCAGAAGCTTTAGTGACCCAACAAGAACAACAATCAGATCGAGATGTAATGGAGAGTACAAGCATGGATGCTAATGACAGCCCTACAACATCTGGCTGTACGCAGACAAGTCAAAACACTGTAGTCACAAATAAAGTAAACCGGGCTCTTCAGACATCATGCACAATAACTGAGCACCCCTGTATTCCTTTCACTTCTTTAAAGGACGTCAAGACATGTGCAACTGTACCTTACAAGTTCCGCTGCAGGGTTAAAGCAGTCATGTATCTGCCATCTGATGTGAAGAATTTCATACGGAGATCTTGTCAGTCTTGTAAATACAACATGCATGTAGAAACTTCTGATACTCTCTCATCATCTGCACCAGTGCTGTGCCCTCGCTGCAAACAAGAGACGAGCCTTGTGTATTTGTTTTCCTTTGTTCTTGAGGATGAATCTGGCCGCCTTCTTCATGCAATGGTCTTTGACAAAGATGTTAGCACTTTCTTTCCTGATCTTCCATCACCTGAAGAGTTCTTAGAGCAGTCTTGTGTTCAAGAGACTGTACAAGAATGGATGCTATCCATGACACACAACCCAGATAATTCAATTGAATGTGTTAACCAAGATCCTGGCAACGACAAGAGGCCATGGTTAGAACTTTGTATTTTGTCATATTTCCCAAATGCAAACAAAGATTGTAAGGACAAAAAGGAACTTGATCATCTCAACGACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91WC1	Protection of telomeres protein 1 OS=Mus musculus OX=10090 GN=Pot1 PE=1 SV=1
P62597	Protection of telomeres protein 1 OS=Gallus gallus OX=9031 GN=POT1 PE=1 SV=1
Q9NUX5	Protection of telomeres protein 1 OS=Homo sapiens OX=9606 GN=POT1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002243 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02765 all species →	POT1	Telomeric single stranded DNA binding POT1/CDC13	Domain	Interproscan
PF16686 all species →	POT1PC	ssDNA-binding domain of telomere protection protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR011564 all species →	Domain	Telomeric single stranded DNA binding POT1/Cdc13	Interproscan
IPR028389 all species →	Family	Protection of telomeres protein 1	Interproscan
IPR032042 all species →	Domain	Protection of telomeres protein 1, ssDNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14513 all species →	PROTECTION OF TELOMERES 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0000781 all species →	Cellular Component	chromosome, telomeric region	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000783 all species →	Cellular Component	nuclear telomere cap complex	Interproscan
GO:0010521 all species →	Molecular Function	telomerase inhibitor activity	Interproscan
GO:0016233 all species →	Biological Process	telomere capping	Interproscan
GO:0032210 all species →	Biological Process	regulation of telomere maintenance via telomerase	Interproscan
GO:0043047 all species →	Molecular Function	single-stranded telomeric DNA binding	Interproscan
GO:0051974 all species →	Biological Process	obsolete negative regulation of telomerase activity	Interproscan
GO:0098505 all species →	Molecular Function	G-rich strand telomeric DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11109	POT1; protection of telomeres protein 1	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.