Gene detail

Detailed information of KAJ7390002.1 in Desmophyllum pertusum

Genomic Location: MU825422.1:843197...849077
NR annotation: KAJ7390002.1, U5 small nuclear ribonucleoprotein component [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
O08810	116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus OX=10090 GN=Eftud2 PE=1 SV=1
A4FUD3	116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus OX=9913 GN=EFTUD2 PE=2 SV=1
Q5F3X4	116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus OX=9031 GN=EFTUD2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14492	EFG_III	Elongation Factor G, domain III	Domain	Interproscan
PF03764	EFG_IV	Elongation factor G, domain IV	Domain	Interproscan
PF00679	EFG_C	Elongation factor G C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005517	Domain	Translation elongation factor EFG/EF2, domain IV	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR000640	Domain	Elongation factor EFG, domain V-like	Interproscan
IPR035647	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR041095	Domain	Elongation Factor G, domain II	Interproscan
IPR035655	Domain	116kDa U5 small nuclear ribonucleoprotein component, C-terminal	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42908	TRANSLATION ELONGATION FACTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0030623	Molecular Function	U5 snRNA binding	Interproscan
GO:0046540	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0071007	Cellular Component	U2-type catalytic step 2 spliceosome	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan