Gene detail

Detailed information of KAJ7391620.1 in Desmophyllum pertusum

Genomic Location: MU825405.1:998954...1004768
NR annotation: KAJ7391620.1, hypothetical protein OS493_017317 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7391620.1

ATGGAGGTCGACCAAAACGCTTCGGAGAGATTTCGTTGGTTCCGGGTCAGTTGGAAATTGGGAAGGATCGGTGTAAATCTCCGATTCAACCCTGTAGTGACTATTCTATCAGCCGCCATTATTTGGTCCTTTGTGATATGGTGCTCGGTTGAAGCTGATGCGGCTTTCAATGAGATGACTTTATGGACGAAATGGATTACGCATACCTGTACCTGGATGTACATTGGCACCCAAGACGTCTGGGCCGTGTTCATTATTGTCCTCTATTTCTCGAAATACGGCAAAATGAAACTGGGCAAACCAGATGACAAACCAGAATTCAGCGACGCGACGTATTTCACCATGCTGTTCGCCGCTGGGATAGGCGTTGGTCTGTTCTACTTCGGAGTGGCTGAACCTGTGCGGCACTATGCGTCTATACGTCACTACAAAAATGGAAACCGTTACTTTGGCAGACATAGCGACAATCAACTTGCTCAGGACGCTATCAATGTAACGCTGTTCCACTGGGGTATTCATGGCTGGATTGTGTACGTTATTGTCGGTCTGCTCCTTGCCTTTATGGGTTACAGAAAAGGCCTTCCCATGACCATGCGCTCTTGTTTCTACCCACTTATCGGCGACAAGATCTATGGTTGGATGGGAGATGCTATAGACATCCTTTCGGTGGTTTGTACCATGTTTGGCGTTTGTACCAGTCTAGGGCTCGGTGTTATGCAGATGAATACTGGAATCAATCGCCTTTTCCACAAGTTTGAAATCAACGTCACCAATCAAATTATCATCATTTGGTGCGTCACTGCATGTGCCACAGCCTCTGTGGTCAGCGGTCTGAAAGTTGGAATCCGTCGGCTGAGCGAGATCTGCTTTGGCCTCGGGATGTTCCTTATGATGATTGGCTTCTTTTACGAGGACACTTGGCACTTACTCAACGTGTATGTTCAAAGCATTGGATACTACCTGCAGTGGATTGTACAACTTGGCTTCCATACAGATGCGTTTGCACAACTGGGAAATGCACCGGACGGGAAGCAGGCTCAAACATGGATGAACGATTGGACCATCTTCTACTGGGGATGGTGGATCGCCTGGTCTCCATTTGTGGGCATGTTCATCGCCAAGATTTCAAAGGGAAGAACCATCAGGCAGTTTATCAATGGCACAATGACGGCTCCAATAGTATATTCGTTCCTGTGGTTCTGCATTTTTGGTAGCGCGGGGTTGAAGATGGAACGAGATGCTGCGTTGGCCAACATCATTTGTAACTCTACGCTCGGAGGTACAGATAGTACGGAGGCCTTAAATGGTATGTTCCGCCTTTCGTGTCGAGGAACAAATCAGATGTGGTTTGATGTGATGAGCCAATATGGTGACCTGGGGGTGTTTCTCTCAGTAGTTTCACTGGTGAGTATCACCCTTTATTTTGTGACTAGTTCAGATAGCGGTTCCCTGGTGATTGACTGCCTGTCTGCAAATGGTGATCCTGAACCACCCATCATTCAGCGCGTTTTCTGGGCGTTAACAGAAGGTGCCTGTGCCACAGCTCTGCTTTATTCTGGAGGTACTAACTCGCTGAGAGCACTTCAGGCAATGTCCATAGCGTCCGGCGTCCCTTACACTATCCTACTGTGCTTTATGTGCGTGGCATTATGGAGAGCAGTTAAGATGGAAGCTGGTGATCTTGATCCCCATGGTCCACAGTTTACCACAGGCCTCTTAGACGTACTAAGCAACCCCACTGCGTTGAGCGTTGGAAAGGTTCTTCTTGCAGTAGTGGCACCATGGTATTCCCTGGGGAAAGCTGCAGCTAAGATCGGTGGACCAAAAAGCAATAGATGTCTGTATATGTTGGTCCTTGCGATTCCCTTCTATCTCTGGATTGCTTTCATGGCTCTCGAACCCATGGTTGACGGAATATCGTATGTTGGTTGGACGGTACTGTGTGGATTTTTCGCCTACGCTACAGCTATCCGTAACTCCATACGAGAGAAGTACGGTATCTATGGTAACATGGCTGAAGATTTCTTTGCAGTGATGATCACCTACCCCTTTGCAGCCTACCAGATGGAGCACCACATGGACCATGTGGACCATTTCAACCTGGAAAAACTACCAGACCTGAATGGTGCAGCAACCCACGATATCACTTTGTCTGAGGTTCATGTCAACTCACTGAACGAAGACGTCGATTGCGTTAAGCCAAGCAAGCCACACTCGATGAGTAGTGGTGTGTCCAGCCATGATGTCGATATAGCTGAGGTTCATGTCAACCCGCTTCCCGAAGCGGACATCAGTAAGCTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q87NG3	Glycine betaine transporter 1 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=VP1905 PE=1 SV=1
A0A0B5RUB0	Trimethylamine transporter OS=Myroides profundi OX=480520 GN=tmaT PE=1 SV=1
P9WPR6	Uncharacterized transporter MT0942 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT0942 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000591 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04749 all species →	PLAC8	PLAC8 family	Family	Interproscan
PF02028 all species →	BCCT	BCCT, betaine/carnitine/choline family transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000060 all species →	Family	BCCT transporter family	Interproscan
IPR006461 all species →	Family	PLAC8 motif-containing protein	Interproscan
IPR018093 all species →	Conserved_site	BCCT transporter, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30047 all species →	HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0071705 all species →	Biological Process	nitrogen compound transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7391620.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.