Gene detail

Detailed information of KAJ7392676.1 in Desmophyllum pertusum

Genomic Location: MU825400.1:1073514...1082536
NR annotation: KAJ7392676.1, hypothetical protein OS493_010327 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7392676.1

ATGAACTGCATAACTCGGAGAGGTCGTGGTATTCTGGTGGCGTTCGAAGGTTGTGATCGAAGCGGGAAATCAACACAATGTCAAATGCTTGTAGAATATTTGAAATCGATTGGACGAGATGTAGCTCTTTTACGATTTCCAGACAGAACAACAGCCATTGGACAGTCCATCAATTCATATCTACAGGGCACAACTGAGTTAGAAGATCATGTGATTCATTTACTGTTTTCTGCAAACAGATGGGAGGCTGTACCCAAAATAAAGCAGCTTTTAGACAATGGAACTCTTGTGATAGGTTTTGATGTGACATGGTGTAAGAATCCTGATCGGGGTTTGCCAAATCCTGATGTGGTTTTTTATTTAGACATCTCAACCAAAGATGCCGTGACAAGGGGCTCCTACGGCGAGGAAAGGTACGAGATGGTTGAATTCCAAGAACGAGTCGCAGAGATCTATAAACAACTCAAGAGTGATGACTGGAAGGTTGTAGATGCTATGAAAAATATCAATGAAATTCACACGGAGATCCGAGACACTGTTCTCGAATTGGAAGCGCTGTCAATCGATACAATCGCCAGCCAATGGCAGATAAACATCAATTTACCCCCAATGGGCTTCTTGTGTGTTGCAAGCAGTTTTCATTGCAAGGTCGGAAGAAGTCAACAGTGTCTTAGCAGTGAGCAGATTTGCAACTCTTGTTTCTTCACGCGTTTTGATCACGCGGAACCAAAAATGGAGGCTGGTCCTCTAACGCGAAATTACCCGAACATTTTCGAGTGTTTGACGAGCCACAATCCATCCATGCCGGCTTTTGGCCTACAGAGACCCGTGATGCCCGATAACGTTGAGTTGACTCCAGATGCTACCCACGGATATTCACCATACGCCGAGTCTCCCATGCATTTGCCCGGTTTGAGGACGGGCGCTCACGATTTTATCCACACACTATCAGGGGGTAGTGCTCAAGGGGCGTTTAACCTGCAGGCCAATTATCCAGTCCCAGCTGCGTATTCTTCACTGGCTGCCCGTGGAAGAGAGTTCCTGCTACGCCGTGAACATGTAACGCTGCCTTCTGTATCGTTACCGACTCACACCATCTCCGTGGACGTGACAGCTTCGTCGGCGAATCTTGTTGTTCCACCACCGCCCCCTTCTGCGTTTCAACAAACGATCTTCACGACGAGCAACGTAGCTCTCCATGCCATCAACATTCCAAGTTTCGCCAACGGTCCTGCTCCGCTGCCGTCCCAAGCGCTCGGACAAGACGCGCATCACGCCGCCTCCTACTCTAACGTTGGTCTTTCGAACCACGTTCAAGCGTCACCGACATCAGAAGCCAGCAACAGCAGTAGCGATTCACAAACGGAGTCCTCTCGCGTATCGGTGAATATTGGCGATGCCCAAGGAAGCATTGTGTTGCCTCATCCAAGCCCGCTCAATGCAGTGAAAGCCGGCTTCGTGCCCTCGCCCACAAGCGTTGTGCCGTCCATGGAATTGTCATCCAATGGTGCGTTTCTCCGCTACATAAGACCACAAGGCAAGCTAGAATTCGTGTGCAGATGGGCGCTTCTACGCAACAAAATATCCATCCCTTGCGATAAAAATTACCCAACCATTCAGGAGTTGGTGAAGCATCTTTCTTTGGAGCATGTGGGAGGAAGCGATGGCAATTCTTCACACGTCTGTTTGTGGCATGAGTGTCACAGAGGAGGCAAACCATTCAAAGCCAAGTACAAGCTTATCAACCACATTCGTGTTCACACTGGAGAGAAGCCCTTCTCGTGCCCCTTTGCCAACTGCGGGAAAACCTTCGCGCGCTCGGAAAATCTCAAGATTCACAAGCGCACGCACACGGGAGAAAAGCCATTCGTGTGTGAATTTCCTGGCTGTAATCGTCGTTTCGCCAACTCGAGCGATCGTAAGAAGCACTCCCATGTCCACACCGCGGATAAACCGTACCTCTGTAGAGTGCCAAGCTGTGGCAAGAGCTACACACATCCAAGCTCTCTAAGGAAGCATTTAAAGATGCATTTGAAGGCCGCAAACGGAAGTCTGGCTTTGGACAGTAACGAGAGCATGGCGTTGATGTCGCAGGCGGAATTACAACTGAACAGTTCTAATGTTCAGTCTAGAAATATGCAGCCGTGGTTTGCTTTCGCTCAACAACCACCGAAAAGTGGCATTTCATTGAATGCGCAAGCAGTGAAAGAAGAAACAGCGAACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3B752	Thymidylate kinase OS=Danio rerio OX=7955 GN=dtymk PE=2 SV=1
Q0WW55	Thymidylate kinase OS=Arabidopsis thaliana OX=3702 GN=ZEU1 PE=2 SV=1
Q54GN2	Thymidylate kinase OS=Dictyostelium discoideum OX=44689 GN=dtymk PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006871 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02223 all species →	Thymidylate_kin	Thymidylate kinase	Domain	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF18366 all species →	zf_ZIC	Zic proteins zinc finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR039430 all species →	Domain	Thymidylate kinase-like domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR018094 all species →	Family	Thymidylate kinase	Interproscan
IPR041643 all species →	Domain	ZIC protein, zinc finger domain	Interproscan
IPR050329 all species →	Family	GLI C2H2-type zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19818 all species →	ZINC FINGER PROTEIN ZIC AND GLI	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004798 all species →	Molecular Function	thymidylate kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006233 all species →	Biological Process	dTDP biosynthetic process	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAJ7392676.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.