Detailed information of KAJ7393500.1 in Desmophyllum pertusum

Genomic Location: MU825398.1:3764471...3766747
NR annotation: KAJ7393500.1, Bardet-Biedl syndrome 1 protein [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8NFJ9BBSome complex member BBS1 OS=Homo sapiens OX=9606 GN=BBS1 PE=1 SV=1
Q3V3N7BBSome complex member BBS1 OS=Mus musculus OX=10090 GN=Bbs1 PE=1 SV=1
Q9NEZ7BBSome complex member BBS1 OS=Caenorhabditis elegans OX=6239 GN=bbs-1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006898 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14779
all species →
BBS1Ciliary BBSome complex subunit 1RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011047
all species →
Homologous_superfamilyQuinoprotein alcohol dehydrogenase-like superfamilyInterproscan
IPR028784
all species →
FamilyBardet-Biedl syndrome 1 proteinInterproscan
IPR015943
all species →
Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR032728
all species →
DomainBardet-Biedl syndrome 1, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20870
all species →
BARDET-BIEDL SYNDROME 1 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005113
all species →
Molecular Functionpatched bindingInterproscan
GO:0005119
all species →
Molecular Functionsmoothened bindingInterproscan
GO:0005813
all species →
Cellular ComponentcentrosomeInterproscan
GO:0005930
all species →
Cellular ComponentaxonemeInterproscan
GO:0034464
all species →
Cellular ComponentBBSomeInterproscan
GO:0061512
all species →
Biological Processprotein localization to ciliumInterproscan
GO:1905515
all species →
Biological Processnon-motile cilium assemblyInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16746BBS1; Bardet-Biedl syndrome 1 protein-Cilium and associated proteinsko03037deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Desmophyllum pertusum tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Desmophyllum pertusum, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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