Detailed information of KAJ7393531.1 in Desmophyllum pertusum

Genomic Location: MU825398.1:3967248...3974709
NR annotation: KAJ7393531.1, Chloride transport protein 6 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P51797H(+)/Cl(-) exchange transporter 6 OS=Homo sapiens OX=9606 GN=CLCN6 PE=1 SV=2
O35454H(+)/Cl(-) exchange transporter 6 OS=Mus musculus OX=10090 GN=Clcn6 PE=1 SV=1
Q9TT16H(+)/Cl(-) exchange transporter 6 OS=Oryctolagus cuniculus OX=9986 GN=CLCN6 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001932 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00654
all species →
Voltage_CLCVoltage gated chloride channelFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002248
all species →
FamilyChloride channel ClC-6Interproscan
IPR001807
all species →
FamilyChloride channel, voltage gatedInterproscan
IPR051280
all species →
FamilyVoltage-gated chloride channel/antiporterInterproscan
IPR014743
all species →
Homologous_superfamilyChloride channel, coreInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11689
all species →
CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005247
all species →
Molecular Functionvoltage-gated chloride channel activityInterproscan
GO:0006821
all species →
Biological Processchloride transportInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0055085
all species →
Biological Processtransmembrane transportInterproscan
GO:0005765
all species →
Cellular Componentlysosomal membraneInterproscan
GO:0015108
all species →
Molecular Functionchloride transmembrane transporter activityInterproscan
GO:0043231
all species →
Cellular Componentintracellular membrane-bounded organelleInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for KAJ7393531.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Desmophyllum pertusum tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Desmophyllum pertusum, and in which cell types it is a marker. Expression itself is per-cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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