Gene detail

Detailed information of KAJ7393603.1 in Desmophyllum pertusum

Genomic Location: MU825398.1:4456412...4473627
NR annotation: KAJ7393603.1, Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAJ7393603.1

ATGAACAGAGGAATACTTCGGTGTGTTGGCTGTACTCTTTTAGCCGTCTTGGCTGTACTTTTAACTGATGTTTGTAGTGCAGAACAAGGATTGGATGAGCTGAAATTGCTTGCTATAACGGTAGCAACAGACGAAACAGATGGCTATAAAAGATTTATGAGATCTGCTAAAGTTAATAACATCGATGTGAAGGTACTTGGGATGGGCGAGGAATGGCGCGGTGGAGATATGAGGAATCCTGGTGGAGGACACAAAATAAACATTCTTAAAAAGGAAACAGAACTTCACAGGAATGAAAGCAATCTTGTGCTTATGTTTGTGGACAGCTATGACCTGATATTACTAGCAGATCCTCAGGAATTCCTGAAAAAGTTTCTTGAGTTTAATGCCAACATGGTCTTTTCTGCCGAAGGGTTCTGCTGGCCAGACAGGGGGCTCAAAGACCAATACCCGGAGGTTTCTCATGGAAAGAAATATCTTTGTTCAGGAGGTTTTATCGGTTATGCATTAACATTCCACCAGGTCGTGGCTGATCATGCCATTGAAGATGTGGAAGATGATCAGCTGTATTACACCAAGATATTTTTAGACAAGCAGAAAAGGGATAAGCTCAAATTGAAGTTAGATAACAAAGCAGAGATCTTCATGAACTTAAATGGAGCACAAGATGAAGTAGAAATCAAGTTCAGCGGTGACAAGGCGTGGCTGGTGAACAAGGAATACAACACTCAACCTCTTGTTGCTCATGGTAACGGCCCTAGTAAGCTGTTTTTAAACTACCTGGATAACTATCTGCCAGATAAATGGAATTTTAAAGATGGCTGTACTGCTTGTTCAGAGGATACATTGTCTTTAGAGAATCTCAAGAAAGAGGAATATCCTAAAATCCTGATGGGACTCTTTATTGAGAAGCCAACACCTTTCATACCAGAGTTTTTGACAAGAATGATGCAGTTAGATTATCCTAAGAAACGTATTGATATTTTGGTTCATAACACGATTCCATACCACAAGCCACAAATTGGAGACTGGTTAACAGATGAGATCAAGGATCAGTTCAACTCTGTTACTGTACTGCAACCTGAAGACAACGTGAATGAATATCAGGCCAGAAATCATGCTGTTGAGATGTGTAAAGAGAAGAGCTGTGACTACCTTTTCTCTGTTGATGGTTCTGTTGTTTTGACCAACAAGGACACGCTGAAGATTCTCATCAAACAAAACAGACCTGTGTTAACGCCTGTTATATCAAAGCATGGCAAACTGTGGTCAAACTTCTGGGGTGCACTGGGAGACGATGGATATTATCTTCGCTCACGTGATTATCTTGCAATTGTTCAGAAGCAGAGAAAGGGAGTATGGAATTCTCCTTTCATCACAAACATTTATTTGATCCAAAAAGAAGTCTTGAAACAGATGCAAGGAAGCTTTGGTCCTTCTACGCTTGATCCAGACATGGCTATGTGCAAATATTTCAGAGATCATGGAATTTTCATGTATGCAACCAATCTTCATGAATTTGGCCGTCTGCTGGAGACGGAGAATTACAACACAAATCATCTGCACAATGATTGTGGGAGATCTTTGATAACAGAGTGCCCAAGTTCAAATGACTGGGATGAGAAATACATTCATGAAAACTATTCTCAAAACATGAACCTCAGCATTCCTCTTGCAGAGCCGTGTCCTGATGTCTACTGGTTTCCTATCGTGACGGACACTTTTGCTATGCATCTTGTTGAGGAAATGGAAAATTTAGGTGACTGGTCTGGAGGAAGACACGAGGATAAGCGACTGTCAGGAGGCTACGAGAACGTACCTACTGACGACATACACATGAACCAGGTTGGTTACGAAAGACATTGGCTTCACTTTCTCAAAGAGTACATTGTACCTGTGAACACCAGATTATACCCTGGCTACCACTCTGAGGCTCGTTCTATCATGAACTTTGTTGTGAAGTACGATCCAAACCGACAGTATTATCTCAGACCTCACCATGACTCGTCCACGTACACCATCAACATCGCTTTGACCGACCAGGCATCGATCATGGAGGCGGGGGCTGCAGGTTTTTGCGGTATAACTGCCAAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R0E1	Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 OS=Mus musculus OX=10090 GN=Plod3 PE=1 SV=1
Q5U367	Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 OS=Rattus norvegicus OX=10116 GN=Plod3 PE=1 SV=1
O60568	Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 OS=Homo sapiens OX=9606 GN=PLOD3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004076 (this species only)

Pfam domain

No Pfam domain signature was detected for KAJ7393603.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR050757 all species →	Family	Collagen-modifying Glycosyltransferase 25	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10730 all species →	PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0008475 all species →	Molecular Function	procollagen-lysine 5-dioxygenase activity	Interproscan
GO:0017185 all species →	Biological Process	peptidyl-lysine hydroxylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13646	PLOD3; lysyl hydroxylase/galactosyltransferase/glucosyltransferase	EC:1.14.11.4 EC:2.4.1.50 EC:2.4.1.66	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.