Genomic Location: MU825396.1:3854933...3857817
NR annotation: KAJ7394500.1, SPRY domain-containing SOCS box protein 4 [Desmophyllum pertusum]
Species Desmophyllum pertusum · all data for this species · gene families
| CDS |
| KAJ7394500.1 |
| Protein |
| KAJ7394500.1 |
| UniProt accession | Description |
|---|---|
| A1Z6E0 | Protein gustavus OS=Drosophila melanogaster OX=7227 GN=gus PE=1 SV=2 |
| Q9D5L7 | SPRY domain-containing SOCS box protein 1 OS=Mus musculus OX=10090 GN=Spsb1 PE=1 SV=1 |
| Q96BD6 | SPRY domain-containing SOCS box protein 1 OS=Homo sapiens OX=9606 GN=SPSB1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007207 (this species only) · gene tree & orthology |
| Ubiquitin family | E3|E3 adaptor Cullin RING|SOCS · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07525 all species → | SOCS_box | SOCS box | Domain | Interproscan |
| PF00622 all species → | SPRY | SPRY domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001496 all species → | Domain | SOCS box domain | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR043136 all species → | Homologous_superfamily | B30.2/SPRY domain superfamily | Interproscan |
| IPR001870 all species → | Domain | B30.2/SPRY domain | Interproscan |
| IPR050672 all species → | Family | F-box/SPRY and SOCS box protein families | Interproscan |
| IPR003877 all species → | Domain | SPRY domain | Interproscan |
| IPR036036 all species → | Homologous_superfamily | SOCS box-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12245 all species → | SPRY DOMAIN CONTAINING SOCS BOX PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0019005 all species → | Cellular Component | SCF ubiquitin ligase complex | Interproscan |
| GO:0043161 all species → | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0035556 all species → | Biological Process | intracellular signal transduction | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10343 | SPSB1_4, SSB1, SSB4; SPRY domain-containing SOCS box protein 1/4 | - | Ubiquitin system | ko04121 | deepkoala |
Genes whose expression across the transcriptome samples of Desmophyllum pertusum tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Desmophyllum pertusum, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
