Gene detail

Detailed information of KAK2549065.1 in Acropora cervicornis

Genomic Location: JARQWQ010000132.1:346982...389089
NR annotation: XP_029192989.2, SWI/SNF complex subunit SMARCC2-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAK2549065.1

ATGGCGGCTCGTAAGAAGGATGGCGCTCCTGATTGGAAATATTATGAAACGGCTGAAACTGCGGCTCTTTTTGAGCCTGTGAAACAGTATTTACTTAAAAACTGTAAAAAGTATGTGCAAATGGAACCTCCAACGAACAAGACGTTGGCCACACTTACTGCACAGTTGTTACAGTTTCAAGAAGATAACTTTGGTAAAGATGTCAGCAAGCAAGCCCTTCTCACAAAGCTACCAATGAAGATGTTCATGGATTACTCCTCTGGTGGAAGTCTTTGTGTTATTCTGGCAAATGTATTCAAGACAAAAATGGAACAAGGGTGGAGGAGATTTGACTTCCAGTCACCTTCACGTATGGATAGGAATGTTGAACTCTTCTTGAATATTGAAAAAGCTCTCAAGGAGGCAAAGTTATTGACTGTCCCACAAGTGTATATAATGCCTGACATTGATGCCAAACTTGCAGCAAAGCTCAGAGATATTGTTAAGAGGCACAATGGTGCCATCACTGATGATAAAGCTGCTGCAACTCATTTCGTACATGAACCTCCTCCGCCATTTCCAGAAGATGAATGGTTACGGCCACTATTAAAACAGGATAATCAGGTTCTTGTTCATTGGTGGTATTACCCTGACAGCTATGATACCTGGGTCCCATCTGGCAATATTGAGGATGAGCCTCAACCTGAACCCCAACACCAGGGACCCTGGCAGGTGAACGCTCGCTGGCTTTCTGATCTTGATGTGTTTAATGAGTGGATGAATGAGGAGGATTATGAATTAGCAGATACTGATGGAAGTGGCAACAAAAGAGAAACTTCCCCAGCATTAGGAAAAACAAGAAGGAAGAGTTTGAGACCAGGAACAAGTTCTGATGAACAACCTGGCAGTCCGGATGGAGGGAAATTAAAGAAAAGAAAGAGGTCGCCCTCACCAGACCCAAAAAAGAAAAAGAAGCTGGTAACTCCAGCAAATCCCAAGAAAAAGTCTGGAAAAGAGGAAGACAATGACAGTGACGATGCAACCAAAGATCTCCCAAACCCGTCCCCAGTACCTAATGTTGAAGAAGTTGCAGGTTCAACTGTATCTGCTTCAAAGGGACAAGAAATTGATCTGCAGCCAATGAAAGGAAACGCGTTGACCGACATCTCAGATTCAGGAAAACCAGACGATGGTGATGGAGATGAGGGAGAATCAGGGAGTCAAATGGATACACAGGAACAGACGGAAGAAAGCGCCGAACAGTCAGCCCCAACTTCACCTTCATCCAGCCAACAAAAAGACGGATTATTCAAAGAACCACTTAGTGTCCACGACACAGAACCACATGATGAAAACCTGACAGAGCAAACTCATCATATCATTATTCCAAGCTATGCTTCCTGGTTTGATTACAACAGCGTTCACGCCATTGAACGAAGAGCTATACCGGAATTTTTCAATGGGAAAAACAAATCCAAAACACCAGAAGTGTATCTGGCGTATCGCAACTTCATGCTGGATGCTTACCGTCTCAACCCCACAGAGTACCTCACAGCAACTGCTTGTCGACGAAACTTAGCTGGAGATGTGTGTGCTGTTGTCAGGGTCCATGCTTTCTTGGAGCAGTGGGGTCTGATCAATTACCAAGTAGACGCGGATGGTCGTCCAACGCCAATGGGTCCTCCCTCGACTTCTCATTTCCATGTGTTATTAGATACTCCAGCGGGCCTGCAGCCTCTTCAACCCGCCAAGACTCAGATCCCAGCTTCTCAGCAAATGATCCAGTTTAAAGATGATTTTGGAGGCAAAGAGACGCATAAGAGCGGTTTTACTGGCAGCAATTTTGGGCTTCGTACAGATCAGTACCTTTCCAAAAAGAGCCAAAAGGCAGCAACAGCCACTAAAGAGTGGACGGAACAAGAAACACTGCTACTACTTGAGGGACTGGAAATGTTCAAAGATGACTGGAACAAGGTGGCAGAACACGTTGGAACTCGAACACAAGACGAATGCATTTTGCATTTTCTGAGGCTGCCAATTGAAGATCCGTTCTTAGAAGACGTCCAGCTGGGTCCCTTGTGTCACCAGCCAGTTCCATTCAGCCAACAGGGAAACCCTATCATGTCTACTGTCGCCTTCTTGGCTTCAGTTGTCGACCCACGAGTGGCAAGCGCAGCTGCCAAAGCAGCCTTGGAGAAATTTTCGGAAATGAAAGAAGAGATTCCTCAGGCAGTTATTGACAGTCATGTAAAGAATGCAACAAATCGATCAGAAAAAAGGAAGGTGGAGAATGCCACTGATGACAATTCCAGCACAGAGGAAAAACCTCAGCCAATGGAGGTCAACGGAAGTGAGTCAACAGGAGCTGACGGAGGAGAGACTGGGACACAAAATGTGAAGATGGAAGAATCTACTGAAGCTGATAAAGAAACAGAAAATGGGGATAAATCGAAGACCATCAACGAAGAAAACATCGCCAAAGCTGCAGCGGCTTCTCTGGCAGCTGCTGCTGTTAAAGCAAAGCATTTGGCACAAGTTGAAGAGAGAAAGATCAAGAGCCTTGTGGCATTGCTTGTGGAAACTCAAATGAAGAAACTAGAAATAAAACTTCGACATTTTGAAGAACTTGAGACCATCATGGATCGGGAGCGCGAGGCGCTGGAATACCAGCGTCAACAGCTCCTCGCCGAGCGCCAGCAATTCCATCAAGAGCAACTGAAGGCTGCTGAGATACGCGCACGCGCATCGTCTGGTCACTTGTCACCTTCACAGTCCTCCCCTGGGCAGATCCAACCACAGTCACAGGTTTCCCAGCCTCATCCCCAATTCTCTCAGCAGCAACAAGTGCAGATACAGCCACAACAAAGGCCATCCCAGCAAGTTTCTGTAGTTCCCACAGGCCAAATGCCACAGGTCTCCAGTCCAGCTCAGCCCGGTCAAATCGGATCCAATCCCCCATCTGCCTCACCATCACCAGCGCCACCCATGAATCCGGGTTCTGTAGCCCAAATGGGCTCCCTTCCCGCCTCGGGTTGTAGCACTCCGGTGTCTTTCATTGGATCCAATGCCGCATCTCCGGCTTCTGGCCCGGGTACCCCGAGTTCCGCCCCCCAAGGACATGCCTCTACGGGACAAGTGGCTCACGGTCCCGGTGATGCGGTCGCAAGCCCAGTCCCTCCGCCCTCTGCTCGACAGTATGTCATCCGACCAGCTTACCCTTTGGTGGTTGTGGTCTCTGACGAAACCCCCTCTATGTTTAAACTTGCTTCTTATGGCGAACGGCGTGGACCGGACTTCTACCGAATGATCTCAACGACACAAGCAGGTGCTACTTCATCATTGACGATTGTGGGCAAACAGTACGAATGTAGAGGAGGAGACACGGGCTCTGGGAATCGAACTGCTTTCAACTTCATGATTGTGAACCTTGCATTGGGCGACATTTTTTACACGACCTTCCTCTTGGCCCATTTCACTTTAAGCCTCTATCTCAGCAATCCCTATGATATAACTGGGAATTCCATCTGCATTGTCCTCAGAAAGTTGACATGGCTTGGATCCTATAGTGCTGTTTTTACGATGCTTGTCATTGCCAGAGAACGATACTACACTATAGTGCATCCACATGACAGCAAAGGAAAGCTTACAATGCAGAAATTAAAGGTTCTTATTCCGATTACTTGGCTACTTTCCCTGCTCATAAACATCCGAGGGTTTGTAATGCAAAGCTTCTCAGGAGACATCCCCCTTAAGTCCTGCAATCACAACTGGACAGATAAGAAGATGCACAAGATTCACTTAAGTATTTGGGGCTTCTTCGTAACAGTGTCCACTGTCACCATGTTTACTTTCTATTCCATTGTTGTTTATACATTGTGGTTCAAGAGAAGCAATAACAATGAGTCAGCGCATCAGCAACAGGGTGTGATGAGAATGCGGAAGCGAGTCACATTGATGGTGTTGGTTGTCAGTGCCATGTTTGAAATCTGCTGGATCACAGACACGATCATCCACGCTGTCTTGAGCGCCAACCCCTACGCGATTCCTATCGCTCACACTGTAATCATGTTTAGCTCTGCTGTAAATCCGTTTGTGTATGCACTAATCAGCCAGCGATTCAGAGCGAAGATGAAGGACATGTTATTGCGTATTACACGCTTGTCTGCTGAAAGAAAGATCCACGCTTCGGAAGCTCCTTATATCATACAGGTCTCCTTGGAGACGATGAGCGATCAAGTCCACACCAAAGAAACGTCTGATGAAACAACTTCGGGGACTCTATGA

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q8TAQ2	SWI/SNF complex subunit SMARCC2 OS=Homo sapiens OX=9606 GN=SMARCC2 PE=1 SV=1
Q6PDG5	SWI/SNF complex subunit SMARCC2 OS=Mus musculus OX=10090 GN=Smarcc2 PE=1 SV=2
P97496	SWI/SNF complex subunit SMARCC1 OS=Mus musculus OX=10090 GN=Smarcc1 PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	MYB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16496	SWIRM-assoc_2	SWIRM-associated domain at the N-terminal	Family	Interproscan
PF16495	SWIRM-assoc_1	SWIRM-associated region 1	Family	Interproscan
PF00249	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF16498	SWIRM-assoc_3	SWIRM-associated domain at the C-terminal	Family	Interproscan
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF04433	SWIRM	SWIRM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032450	Domain	SMARCC, N-terminal	Interproscan
IPR032451	Domain	SMARCC, C-terminal	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR049898	Domain	MarR-like, BRCT and chromo domains module	Interproscan
IPR001005	Domain	SANT/Myb domain	Interproscan
IPR007526	Domain	SWIRM domain	Interproscan
IPR032448	Domain	SMARCC, SWIRM-associated domain	Interproscan
IPR017884	Domain	SANT domain	Interproscan
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12802	SWI/SNF COMPLEX-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0016514	Cellular Component	SWI/SNF complex	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan