Gene detail

Detailed information of KAK2549732.1 in Acropora cervicornis

Genomic Location: JARQWQ010000121.1:430661...442629
NR annotation: XP_029212514.2, histone deacetylase 1-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAK2549732.1

ATGTCTCGATGGTGGTGGATAGCTCTGTTCATTTCAGTGGCGGTTTGTCTCAGCGCGGCTGTTTCTCACGATAATTTGCCTCCCGGGCATTCAGAAGACGAACACGATGAAGACCCTGAAGATCAACTGGACGAACAAGATTCTGATACGGAAGAAAAAGAGGAAGATGAAGAAAAAGAAGAAACTGATGATGATAAAAACGAGGACGATGAAGATGACGAAGGAGATGAGGAAGACGGTGAAGACGAAAGCCAAGGAGACGAAGGAGAGGAAACGGATAACACAAACATAGAACACGATGCCTTCTTGGGAGATAACTATACGGAGTTCAAAGGACTCTCCCCCGAAGAGGCACAGACTAAATTGATACAGTTAATAAAAGATGAAATAGACCAAAACAAAGACGGTTATCTCACGGAAGATGAAATCAGAGCAAGGTTCCATGTGACAACCAAAGAATACCGAAGAAAAGAAGTTATGGAAACAATGAAACAACACGATGAAGACAAAGACGGCAAAGTTTCTTGGGAGGAATTCAAAAAGGGACATTTCACTGACGATGGTAAAGACGAAGATAGTAAAGAACAAATGAAAGAGGATGAAGAGAAATTTAAGTTCGCCGATGAGGATGGAGATGGCAAATTAGATTTAGAAGAATACTTGGCTTTCTACCATCCAGGGGATAATCTTAGAATGGCGGGGTTCACAATACAAGACAGTCTCAAAAAGCACGATAAAGACAAAGACGGACAAATTTCCAAGAAAGAATTTTTGGCCACTTTCAGTGATGTCAATGATGATGCGAAAGAAGAAATGGAAAAAGATTTTAACAACAATTTTGATAAAGACAGCAATGGTGAACTGGATAAAGATGAGATGAAACTGTGGTTGTTCCCAGACGATGATTTCTCCACTGAAGAACCTAAAACTCTCATTAAAGAAGCAGACGAGGACAAAGATGGCAAATTATCAATGGACGAGATTAAGAAAAATTACAAGGTCTTTGTCGAGGACGAAGCAGATGATTCAAACCACGATGAATTGCGTGCGTGTTACTTCACCCCACAAGGCAAACGGAAGAATTTGTCTTCACAGCTAGAGATCTATAAAAGGCAAAATGTAGGAAACGAACTCTGCAGACCGCTTCCCCGTCCACACAAGGCAAACATGGATGAAATGACTAAATATCACTCAGATGATTACATCAAGTTCCTAAAGACAATTCGACCGGACAATATTTCGGAATATTCAAAGCAAATGCAAAGATTCAATGTTGGAGAGGATTGCCCAGTATTTGATGGCTTGTTTGAGTTCTGTCAGTTATCAACTGGTGGTTCCATTGCGGGAGCAGTAAAACTCAATAAACAACAGACAGATGTTGCCATCAACTGGGCTGGTGGTTTACATCATGCTAAGAAATCTGAAGCGTCAGGATTCTGCTATGTTAATGACATTGTTCTGGCCATTCTTGAGTTGTTGAAGTACCATCAGCGTGTTTTGTACATTGATATTGACATTCACCATGGTGATGGTGTGGAGGAGGCATTCTATACCACAGATCGTGTCATGACAGTGTCGTTCCATAAATATGGTGAATATTTTCCTGGAACTGGTGATTTAAGGGATATTGGAGCTGGGAAAGGAAAATATTATGCTGTCAATTTTCCTCTCAGAGATGGAATTGATGATGAATCGTATGAACAAATTTTCAATCCTGTTGTTTCCAAGGTTATGGAAGTGTACAAGCCAAACGCAGTTGTGCTTCAGTGTGGTGCTGACTCTTTGGCCGGTGATAGACTTGGTTGCTTTAATCTTTCACTGAAAGGTCATGCTCAATGTGTCAATTTTGTGAAGAAGTTCAACCTTCCTCTTCTCATTCTTGGTGGAGGTGGTTATACGATAAGAAATGTGGCAAGATGCTGGACGTTTGAGACAGCTGTTGCCTTGGACTCAGATATTGCAAATGAACTTCCTTACAACGATTACTTTGAATACTTTGGACCAGACTTCAAACTACACATCAGTCCATCAAACATGGCAAACCAAAACACCAATGATTACCTGGAGAAAATCAAACAAAGATTATTTGAGAATCTACGTATGTTGCCCCATGCACCTGGAGTTCAGATGCATCCAATACCTGATGACGCACCTGTAGTGGAAGAAAGTGACAATGAAGATGAAGACATGCCTGTGGAATCTGAGAAGAGGATTTCAATGCGCATGTCAGATAAACACATATCTAATCCAGAAGAATATTCTGACTCAGAAGATGAAGGAGATAATAGAAGAGATATACATGTTGCTAAGGAAGGAAACAAGGGCAAAAGACGGAAAGTAGCAGCTACTCCAGTGGAACAGATGGTCACAAATGGAGTGGGAAATTATGAGGATAGTAAGTCTTTGAGCCTATCCAATGATATCTCATCTTCAAAAAATAGCTCATCACCTGTCGAGGAAAAGGAAAAACCCAAAAACACAGTTGATGTTCCCAAGGAAAGCTCTCCACAGACTGTGGCCAGTAGCACTGCAGAGAGTTCAACAGAACCACCCCCTGAGCAAGAAGCAAGTAGGAAAAGTGATGCATCATCGAACACAGACAAACCAGGCATCTCTGGCTCAGTTAAAAGTAATTCTCCCAAGCCAACAGAAGAAGAAAAGAATGAAAAAACTCCTCAATCCACAGAAAGTGGAACAGAAGCTGAGAAAGACATCGAAACCAAGATGGAACACTGA

Transcript

Protein

Uniprot

Uniprot term	Description
P56517	Histone deacetylase 1 OS=Gallus gallus OX=9031 GN=HDAC1 PE=2 SV=1
Q92769	Histone deacetylase 2 OS=Homo sapiens OX=9606 GN=HDAC2 PE=1 SV=2
O42227	Probable histone deacetylase 1-B OS=Xenopus laevis OX=8355 GN=hdac1-b PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13833	EF-hand_8	EF-hand domain pair	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF00850	Hist_deacetyl	Histone deacetylase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR037138	Homologous_superfamily	Histone deacetylase domain superfamily	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR023696	Homologous_superfamily	Ureohydrolase domain superfamily	Interproscan
IPR000286	Family	Histone deacetylase family	Interproscan
IPR023801	Domain	Histone deacetylase domain	Interproscan
IPR003084	Family	Histone deacetylase	Interproscan
IPR050284	Family	Histone deacetylase and polyamine deacetylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10625	HISTONE DEACETYLASE HDAC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0004407	Molecular Function	histone deacetylase activity	Interproscan
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016575	Biological Process	obsolete histone deacetylation	Interproscan
GO:0016581	Cellular Component	NuRD complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06067	HDAC1_2; histone deacetylase 1/2	EC:3.5.1.98	Chromosome and associated proteins	ko03036	deepkoala