Gene detail

Detailed information of KAK2553251.1 in Acropora cervicornis

Genomic Location: JARQWQ010000079.1:509140...531558
NR annotation: XP_044174437.1, folylpolyglutamate synthase, mitochondrial-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAK2553251.1

ATGGCTGAAGATGGTGATGCAGAAACCGAATTGTTGGATTACGAAGAGGAGGAGACAGAGACCACCGTGGAAACTCAGGCAGTCAAAGATCATGCGAAGAAAGACGTGAAAGGCACCTATGTCAGTATTCACAGCTCTGGTTTTAGAGATTTTCTTTTGAAGCCGGAACTTCTGCGCGCCATTGTTGATTGTGGTTTCGAACATCCATCTGAAGTCCAACACGAGTGCATTCCCCAGGCAATCCTAGGCATGGACATCATCTGCCAAGCGAAAAGTGGCATGGGCAAGACGGCGGTGTTTGTCCTAGCCACTCTTCAACAGTTAGAGCAAATTGACGGTCAAGTGAGTGTGTTGGTCATGTGCCACACACGAGAATTGGCCTTCCAGATCTCGAAAGAGTATGAAAGGTTTTCTAAATACATGAATAACATCAAAGTTTCAGTGTTTTTTGGTGGCATAAGCATCAAAAAGGACCAGCAGACCCTGAAGACCAACTGCCCTCACATTGTTGTGGGTACACCAGGCAGAATTTTGGCACTGGCACGTGAAAAGTCGCTTAATCTCAAGCATATCAAGCATTTTATTCTTGATGAGTGTGACAAAATGCTGGAACAGCTTGATATGCGAAGAGATGTCCAAGAAGTATTCCGCATGACTCCTCATGAAAAGCAGGTCATGATGTTCAGTGCAACGCTGGCAAAAGAAATCCGACCTGTTTGCAAGAAGTTTATGCAAGATCCAATGGAGGTATATGTTGATGATGAGACAAAGCTTACATTACATGGCCTTCAGCAGTATTATTGCAAACTGAAAGACCAGGAGAAGAATAGAAAGCTTTTTGACCTTTTAGATGTGTTAGAGTTCAATCAGGTCATCATCTTTGTCAAGTCAGTGCAACGCTGTCAAGCTCTTGCACAGCTTCTGGTTGAACAGAACTTCCCAGCTATTCATATCCACAGGGGAATGCAACAGGAAGAAAGGTTATCAAATTACAAGCAGTTTAAAGATTTCTCCAAGAGAATGCTTGTAGCAACCAACCTGTTTGGACGTGGAATGGACATTGAGAGAGTAAACATCGTCTTTAACTATGACATGCCTGACGACTCTGACACCTACCTTCATAGGGTTGCGAGAGCTGGTCGTTTTGGAACTAAAGGTCTTGCAATCACATTTGTCTGTGATGAAAAAGATGCCAAAGTTTTGAATGAGGTCCAAGATCGCTTTGAAGTCAATGTTGGTGAACTCCCTGAAGAAATCGATCTCACATCATACAGATCAATCGGAACAATGTGGAACCCTGCAGAAGTCAGCGGTTTCTGTATTAATCACGCATGGCGGCAAACACGTGAAAGCAAGGGGAGACGGCAGAGGTTGATGGTGGCTATTTTGAAATTCTTACTTTCTCGACGATTTTCTACTGTCCTTGATGTAACGACAAAAGCTATGAAGCAGAGGAATTATGAGGATGCGGTAAAAAATCTTAATTCTCTTCAAACTAATGCACAAGTGCTGGCAGAAATTCGACGTAGCAAAGACCGGAATGCCAGCAACAGTTTACCGGAAATGCGGCAGTTCACCGAGCGAGCTGGAGTGAAATTGGAGGATCTGGACAAACTGTCCGTTATTCACATCAGTGGCACAAAGGGAAAGGGCTCAACTTGTGCTTTCTGTGAAAGCATTTTACGTCATCAAGGCCTCAAGACTGGGTTTTATAGCTCACCTCATTTAATGGAGGTCCGAGAAAGAATCCAAATCAATGGAACACCTCTACCCAAGGACAAATTTGCAAAGTATTTTTTTGACTGCTGGGATAACTTGTGTAACAATGGTGATGAACATGGAAAAAGTAATATGCCAGCTTACTTCAGATTCTTGACACTGATATCCTTTCACGTTTTTTTGCAAGAAAAGCCTGGTGTTCCAGCCTTCACAGTACCACAACCTGAAAATGCTTTGGCTGTTGTGGCAGATAGAGCAAGAGAAATAAAGCTGTGCACAACCTGGTTGCGCCGTAAAGATGAATATCTGAGAGAGTCACTAAGTACCACTGATTCATTGGAAAGAAATCTCAACAGTGAAGAACCACTGGAGAAAAAAGTCAAATATTTTGTTCCTGTGGCTGAAACATTTGATATTCCCGACCCCTTCAGAAACGGTTTGAAAAATACCAGATGGTTGGGAAGGAATCAAGTCATAGTCAGACCCAGGTTGACTTTCTATCTTGATGGCGCTCACACACCTAGGAGCATGGAGGCCTGTGCCAAGTGGTTTAAAAAACGAGCAGATGAAGAAAAAGAAAATGAGAGTGGAAATGTTGTAAGAGTGTTGCTTTTTAACCTGACCGGTGATCGGGACCCTGATAACCTTCTTAGACCAATAATGAGGTGCAACTTTGATTATGCAATGTTTTCCCCAAATATTGCTAATCTGGAGCCAAAATTAAATGATGCAGATTTGACGAATTTTATGGTGACACGGGATAACCAACTGCAATGGTGTGTGGAAAATCAACGTGTGTGGATCGCTTTGAGGGGTGCTGAATTTCCAGGGCGTGCAAACCCTCAAAGCAATTGCACAAACAATGATACTGCCATGGAAAACGGCTTTGATGATGATGAGCAATCAGCGTTGTTTGCAAGTGTTTCTCAAGCAATCAGCTGGCTGGTAGCAGGCACAGATCCTCTCATTCCTCCATCTTCTACAGGGGGTTATCCTTTACCTGGTTTCATTTCAGAGGCCAAAAGAATTCAGGTTTTAGTTTGTGGAAGTTTACACCTTGTGGGTATAACCATGAAGGTGCTTGGACCTGAAATTGTTGGCAATATGTAG

Transcript

Protein

Uniprot

Uniprot term	Description
Q9Z1N5	Spliceosome RNA helicase Ddx39b OS=Mus musculus OX=10090 GN=Ddx39b PE=1 SV=1
Q63413	Spliceosome RNA helicase Ddx39b OS=Rattus norvegicus OX=10116 GN=Ddx39b PE=2 SV=3
Q5WR10	Spliceosome RNA helicase DDX39B OS=Canis lupus familiaris OX=9615 GN=DDX39B PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR036565	Homologous_superfamily	Mur-like, catalytic domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036615	Homologous_superfamily	Mur ligase, C-terminal domain superfamily	Interproscan
IPR018109	Conserved_site	Folylpolyglutamate synthetase, conserved site	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0016881	Molecular Function	acid-amino acid ligase activity	Interproscan
GO:0004326	Molecular Function	tetrahydrofolylpolyglutamate synthase activity	Interproscan
GO:0009396	Biological Process	folic acid-containing compound biosynthetic process	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan