Gene detail

Detailed information of KAK2555635.1 in Acropora cervicornis

Genomic Location: JARQWQ010000061.1:104071...141776
NR annotation: XP_044182966.1, F-box DNA helicase 1-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAK2555635.1

ATGGCACAAAATGCTTCACCCCGGAAGATACAAAACAGGAATGTTTTGTCCCCTCAGCAAAGACTGATTTCGAATTACTTCACTCCAAAGAGCGGTATCACTAAAGAGGTAGTAAATTTTCCCGCAAGACCGGAGGAAACAGCTGGAAGATTTCAACGGACAACGGCAATTCAAACTGGTGACAGTTTCACTAATGCCACATGGGATGGAACGGTTCTCCCTCGGGAACCCTGTGGTCTCACAACTGAAGCAAGATGCCTGAAAATTCGGGGACAAGATAATGAATGTTTTGAGAGAACTGCTGTTCATTCACGCTCGTTTCGTCGGTCTTGTTTTGGGGAAGAAAAAACTTGGAAAACTTCCATTGCTGGAAACAGCCTCGGCAAAGACCCTGTGCATTGCTCTGGAAATAGACGTCCTCAATTTGGCGAACAAACGCGTGTTTCTCCTACCATGGCGCCTGTGAAGGCTAATTATAAAAAGTGTTCATCTTTTTCAAATCCAACGTCGACTAGCTCAGACAAGAGAAAACGATCAGAAGGGTCAAGGAATCATCCGTGTACAGAAGGGCCAATAGTGCCTAAAAAACGTCAAAAGAACATACCGATGAACTGTGAAGAAAGGGGAATTTCCAGCTCAAGCGACAGCGATGGTTGCGTGGTCACTCTGGTGCAGTGCAATACGGACGGCCAGAAGAGCTCAAAAAGCAGCGGCGAATCTTGTCGGAAAGCTACCAAAAGAAAGCTAAAAAAGAGGATAATTGTGTCTTCATCTGGAGCATCAACTTCTAGTGACAATGGCAGCAGTGAATCCTTAGTTAAAATTAGCAATAAGAAGAGCAAAAAATCTTTGTCTGCGACGCCAGTGTCAAGAGAGAGCACCAAAAAAGCCATAAAAAAGAGGATGATTGTTTCTTCATCTGAAGCATCAACTTCTAGTGACAATGGCAGCATTGAATCCTCAGAGAAAATTAGCTATAAGTTGAGCAAAAAATCTTTGTCATTGACGCCACTGTCAAAAGAGAACACAAAGAAAGTGAGCAAAAAGAGGGTAATTGTGTCTTCATCTGAAGCATCAACTTCTAGTGACAATGGCAGCAGTGAATCCTCAGAGAAAATTAGCAACAAGAAGAGCAAAAAATCTTTGTCTTTGACTCCACTGTCAAAAGAGAGTACAAAAAAAGTGAGCAAAAAGAGGGTAACTGTGTCTTCATCTGATGCATCAACTTCTAGTGACAATGATAGCAGTGACCGTTCGCAGGAGAATGGCAAAAATGAGAAGATAAGAGAGGCTGTGAAGCCAATGTCTAGAGGGAGTGTAAATAGGACTGCTTCACCAGCAGCTGTTGCAAATAAAGAATATGCGCCTTCATCTTTGAAACCACTGTCTAAAATGAATGCAAACAGGAAACAATCTTTGCGGAAAACTGGCAAAAAGAAAGCAATTTTGACTTTATCTGCAACATCATCCACCTCTTGCGCCAATGAAAGAATTGAATCCTCACACAAAACTGGTAAAAAGCGGGCTACCGGTAATTCATCTTCATGTTCCAAGTCTCAAGACTCTCTAAAATGTAGAAAAAAGAAGGCAAGGAAAACCAAGACTTGTCGATCAGCAAGCTCTTCCAGGAATGGGCCAGTAGAAGATGACGATGAGAGCAATACAGAAGATGACTCAGATACCAACCCCTCAGGGACTGAGTTTTCTCATCTGCCTGAAAAGATAATGGAGAACATTTTCTGTCAATTACCTATGATAGACTTGCTCTTAAACTGCGCTTTAGTGTGCCGTCAGTGGAATAACATCGTTGCAAGACACACGTTCATTCCATGGAAGAAAAAGTACTTTCGCCTAAAAAAGAAAGATGCTGAATGTGAGGAGGAGATGACAAGGTTTCTGGATAAGGAAGGTCTTTTTGAGTTGGAACTGTTTCCTTCAAGCCTTTCAAGTTTTATGAGGACGTTAAAAGGAAAACGCTGCTCATCACTGACAGAAAACTTGAAAACACACTGCAAATTTCCACTGATAAAAACCTTCCTGGAAACACTGACAGAGAAATCAACAATGCACCCAAGCACATGGTCAGTGGTTTCCCTCTTGACATTAGTCTGTCAAACTGTCTATGAAGTACAAGACATTTTGCATTGCTTGGTTCGGTCATCGTGTCTGGTGCACGATATCCTGGAGTGTTTTTATTGCTTAGCTTCCATTTTTTATCACCTTGCGACACAAAACAGGATAGACAGTGGATTGCACTACAGAGTCTACTACGCACTTTACTTGTACGAGAATTCGTACCAGGCGACTCATTCTCCCATTACTTCTGTGTTTGATGGGGATCCCTGCAAACAGCAATCTATAAGAAAACAGAGATCTCTTGGAGAAAAGCTTAAACTAACTCACGAACAAGTGCGGATTCTTAAGCATGATGTAAACATCGGAGAAGTTGCTAAGATCGTGGCTTTTGCAGGGACGGGGAAGACAACCACTTTGGTGCAGTACACAAAGATGCGACCAAGGACGAAATTCTTAAATGTGGTGTACAACAAGTCAACCCAGTTGCAAGCTGTTGAAATATTTCCTTCAAACGTTGAATCTCGAACTGTTCATTCTCTGGCTTACCAGGCTGTGGGATTTCGCTACAAAGCCAAGCTGGCTTATGCAGTGAGTGTCAGAAACATTATGAACGCGCTCCCATCGGAGGGCGGATTTCTTCACGCGCGGAGAGTTGAAGACACTCTTAAAAATTTCATAGCCTCTGCCAGCACCACTGTGAAAAAGAAGCACATTCCAGAGGCGCGTGTTTACGCGTCGGATTTATTAGATGTGAGGGCAGTCTTTGGTGACCAGAATCATTATGATGACGGCTATTTTCAAAGCGAGATATATTTGAAGAAAGTTAAAGAGCATGCGGTAAGACTATGGGAGCGAATGAAAGATGTTATGGATACAGAATTCCCTATCACCCACGATGGTTATCTCAAGGTTTATCAGCTCTCCCGACCAGCTTTGGATTGGTTTGATTGTTTGTTAGTCGATGAAGCCCAGGATTGTACACCTGCTGTCGCAGACATTCTCCTCAGCCAAGGCTGTGCCAAGATTCTTGTTGGCGACCCTCATCAACAAATCTACGCCTTCCGTGGAGCAAAAAACGCTCTTGCAGATGTACAAAGCACGCACACGTTCTACCTAACTCAGTCTTTCAGATTTGGTCCGGAAATAGCTCACGTCGCTTCCAGCGTGCTTGATGTACTGAAAGGTGTCAGGGATAAGACCCTTGTTGGAGTAGCCAGGAAAGGTTCTGTACTTGGAGAGACAAGCGGCCAGATGTGTGCAATCACGCGATGTAACTATACGCTATTCAATGAAGTTGTTCGCGTTTGTAGCGCCCAAAACGACACCAAAGTTGGTTTTGTTGGGGGAATAAGAAGCCTTGGTTTAGCCCGTATTGAAGATATCCACAAACTGTTTGTTTGTGGACCGAATAACCCATCGTATGGCATCAAGGATCCGTTGATCAGGAAATTTCGCTCCTTTCATGAGCTGAAGAAGTATGCTACGACGGCTCACGACCCGGATCTTCTTGGAAAAATTAAGATTGTTGAGACGTACGGGCGTATGTTAAAACAACAGATCGAGGAGATCAAATCCAAAGCCGTTAGCGACTTGCCCGATGCAGATATTGTCTTTTCCACGGCTCACAAAGCTAAAGGACTCGAGTTCGACACTGTTCGCATTACGGACGACTTTCTTCCAGGATCGGACACTGGAATGATGTCATTACAATCTCAAGCAGAGGACGAGAAGAATTTGGTTTATGTCGCTGTTAGTCGTGCAAAAAAGTGTCTTCAGCTGAATGAGACTTTACTGCGCATACTCGCCTGTAGAATGTCATTTGTCTGTATAGAATGCAACGATCAAATAAACCCTTCGCCATCAGATCACTTTGCTGTCAAAAAAGAAGACATAACTTTGGGCGGAAATATTAAGTTACCTGGTGGTCGACTTTGTTCTGCTTGCGCCACAAAGAAGGCTCCTCATCTGGGATCTTTGATGCGTAAAACAAGTAACACAGCAGATAATGAGAGTTCTTAG

Transcript

Protein

Uniprot

Uniprot term	Description
Q8K2I9	F-box DNA helicase 1 OS=Mus musculus OX=10090 GN=Fbh1 PE=1 SV=1
Q8NFZ0	F-box DNA helicase 1 OS=Homo sapiens OX=9606 GN=FBH1 PE=1 SV=2
F1ND48	F-box DNA helicase 1 OS=Gallus gallus OX=9031 GN=FBH1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00646	F-box	F-box domain	Domain	Interproscan
PF00580	UvrD-helicase	UvrD/REP helicase N-terminal domain	Domain	Interproscan
PF13361	UvrD_C	UvrD-like helicase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810	Domain	F-box domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000212	Family	DNA helicase, UvrD/REP type	Interproscan
IPR014016	Domain	UvrD-like helicase, ATP-binding domain	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR014017	Domain	UvrD-like DNA helicase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11070	UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0000725	Biological Process	recombinational repair	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0031297	Biological Process	replication fork processing	Interproscan
GO:0043138	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10300	FBH1, FBXO18; F-box DNA helicase 1	EC:5.6.2.4	Ubiquitin system	ko04121	deepkoala