Gene detail

Detailed information of KAK2558556.1 in Acropora cervicornis

Genomic Location: JARQWQ010000044.1:2177297...2187527
NR annotation: XP_029209649.1, putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAK2558556.1

ATGTCAAAAAGAAGGCTGGACGTTGATGGTAACTCCTCTGGAGCGCTGAGTACGGCGAAGAGGATTAAAGAAGAGTTGAGTAATCCAAGCAACATGCGTGGAAAAATCAATCCTTTCAACGGCAAACTCTTCACAGACAAATATTTTGATATTCTGAAGAAAAGAATTGAGTTACCAATTCCTCAGTGGTGTTTGGAAACACGCGTGGACAAGCGTAAATGTGTGGCCTGTACTCAGCCCAGAAGGGTAGCTGCTATGAGTGTTGCCCAGCGTGTGGCTGATGAATTGGATGTGATGATTGGTCAGGAAGTTGGCTACACCATACGATTCGAAGATTGTACCAGCCCAAGAACAATTCTCAAGTACATGACAGATGGTATGTTGTTACGAGAGGCTATGACAGATCCTCTTCTTGACCGTTATGCAGTTATTTTACTTGATGAAGCTCATGAAAGGACACTTGCTACTGATATCCTGATGGGGCTTCTGAAAGAGGTTGTTCGCCAAAGACACGATCTCAAGATTATCATCATGAGTGCAACCTTAGATGCTGGAAAGTTTCAAGAGTATTTTGACAAGGCTCCACTGATGACAATACCTGGGCGAACTCACCCTGTTGAGATATTCTACACCCCTGAACCAGAGCGGGATTATTTGGAAGCAGCCATTAGAACTGTGATTCAGATTCACATGTGTGAGGAAGTGGAGGGTGATATTTTGCTCTTTCTCACTGGACAGGAGGAAATTGAGGAAGCTTGTAAAAGGCTAAAGAAAGAAATAGAAAATTTAGGCTCAGAAGTTGGAGAGTTGCGTTGCATTCCACTGTACTCTACTCTTCCTCCTGCTCAGCAACAGCGTATCTTTGATCCTCCACCACCCAAGAGAGCCAATGGTGCTATTGGCCGCAAATGTGTTGTGTCCACTAACATTGCAGAGACATCTCTCACTATTGATGGTGTGTATAATCCTCGAATTCGTGTGGAGTCTTTGCTGGTCTCTGCCATCTCAAAAGCCAGCTCACAGCAGAGAGCAGGTCGAGCTGGCCGTACAAGGCCTGGCAAGTGTTTCCGTTTGTATACAGAGAAAGCTTATCAGACAGAAATGCAAGATAACACTTACCCGGAGATTCTTCGATCCAACCTTGGCACAGTTGTGTTACAGCTCAAAAAGCTGGGAATTGATGACTTGGTGCATTTTGATTTCATGGATCCTCCTGCACCTGAAACACTGATGAGAGCTCTTGAATTATTGAACTACCTTGGTGCCTTGGATGATAATGGCGACCTCACACCGCTGGGTTCCATGATGGCTGAGTTTCCTCTAGATCCTCAGCTTGCCAAAATGGTGATTGCAAGTTGTGACCATAACTGCTCCAATGAAATTCTTTCTGTTACAGCTATGTTGTCAGTCCCTCAAGTTTTTCTGAGGCCAAATGAGGCAAGGAAAGCAGCTGATGAAGCAAAGATGAAATTTGCTCACATTGATGGCGATCATCTGACCTTGCTCAATGTTTACCATGCTTACAAACAAAGCCATGAAGATGTACAGTGGTGTTATGACAATTTTATTCAGCATCGATCCCTGAAGTCTGCAGATAATGTAAGAGATCAACTGACCCGCATCATGGATAGATTCAATTTGGCACGCCGCAGCACCGACTTCAACAGTCGCGATTACTACCTCAACATCAGGAAGGCTCTAGTGGCAGGATTTTTTATGCAGGTAGCACATCTGGAAAGGTCTGGACACTATCTCACAGTCAAGGACAATCAGGTTGTACAACTTCATCCATCAACGTGCTTGGACCACAAGCCAGAATGGGTGCTGTACAATGAGTTTGTCTTGACAACAAAGAATTACATTAGGACCTGTACTGACATCAAGGCTGATTGGCTGGTGAAGTTGGCTCCACAGTACTATGACATGAGAAACTTTCCCATGTGTGAGGCCAAACGGGTTCTGGAGAGGATCATGGACAGGGTGCAGAAGAATAGATGA

Transcript

Protein

Uniprot

Uniprot term	Description
O43143	ATP-dependent RNA helicase DHX15 OS=Homo sapiens OX=9606 GN=DHX15 PE=1 SV=2
O35286	ATP-dependent RNA helicase DHX15 OS=Mus musculus OX=10090 GN=Dhx15 PE=1 SV=2
Q5RAZ4	ATP-dependent RNA helicase DHX15 OS=Pongo abelii OX=9601 GN=DHX15 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04408	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR048333	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011709	Domain	DEAD-box helicase, OB fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12820	DHX15, PRP43; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43	EC:5.6.2.6	Ribosome biogenesis	ko03009	deepkoala