Gene detail

Detailed information of KAK2559736.1 in Acropora cervicornis

Genomic Location: JARQWQ010000039.1:1945243...1966273
NR annotation: XP_029199100.2, AP-1 complex subunit gamma-1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAK2559736.1

ATGCCAGCTCCCGGAAAGCTTAGGGACTTGATCCGAACAATCCGAGCGGCGAGGACAGCAGCGGATGAACGATCAGTAATTGCAAAGGAGTGTGCATACATCAGGGATTCATTTAGAGAAGAAGACAATGATTTCAGATGCCGCAATGTTGCCAAGTTGCTTTACATTCACATGTTGGGATATCCAGCACATTTTGGTCAGCTTGAATGTTTAAAATTAATTGCTTCTCCAAAGTTTACGGACAAAAGAATCGGGTACTTAGGAGCTATGCTTCTCCTAGATGAGCGACAAGATGTCCACTTGTTGGTGACAAATTCCCTTAAAAATGACCTGAATCATTCCAACCAGTTTGTCATTGGTCTGGCACTATGTTCTTTAGGAAACATTTGCTCTCAGGAAATGAGTCGAGATTTAGCCGGAGAAGTGGAAAAATTGCTGAAGTCAACTAACTCTTATCTCAGAAAAAAGGCTGCCTTATGTGCTGTAAGAATCGTTCGAAAGGTTCCTGAACTTCTGGAAGTGTTTGTTCCATCGACAAGGTCGCTTCTTAATGAAAGAAATCATGGTGTGTTGGTCTCTGGGGTGTCTTTGGTCACCGAGATGTGCCGTGTTAACCCTGAAACACTATCACATTTTCGAAGGCATGTTCCTATATTAGTGAAGACATTAAAGAATCTGGTAATGTCAGGATACTCTCCAGAGCACGATGTATCAGGAATCAGTGATCCATTTATTCAGGTTAAAATTCTGCGACTCCTGAGAATGCTTGGCAAAGATGAGGAATCAGTCAGTGATCAGATGAATGATGTTTTGGCTCAGGTTGCGACAAATACAGAAACAAGCAAAAACGTTGGCAATGCCATCCTCTATGAGACAGTTCTCACCATAATGGACACCAAGTCTGAGAGTGGACTTAGGGTTTTAGCGATCAATATTTTAGGACGATTTCTTTTAAACAATGACAAAAATATTAGATATGTGGCTTTAAACACACTTTTAAAGACAGTTCAAGCAGACTACAATGCAGTACAAAGACATCGAACGACAATCTTGGACTGCTTGAAGGACCCAGACATTTCTATAAGGAGGAGAGCAATGGAGTTATCCTTTGCTCTTGTCAACTCCAGTAACATTCGTGGAATGATGAAGGAGCTGCTGGCATTTCTTGTCAATACTGATGTTGAGTTTAAGTCTTATGTCACTTCAGAGATCTTCTTGGCAGCAGAAAAACATGCACCAAACAAAAGATGGCACATTGACACCATGATGAAAGTTCTAACAACTGCTGGAGGTTATGTCCGTGATGATACAGTACCCAGTCTGATTCACCTGGTATCTGCGTCAAGTGAACTGCAAGGATATGCTGTCCAGCGTTTGTTCAAAGCCATGTTAAATGACATCAGCCAGCAACCTCTGGTGCAAGTTGGGTCTTGGTGTTGTGGAGAATATGGAGAGCAGCTTTTTGTTGAAATCGAAGAGGACGAGGCCACCCCAGTCACCGAAAATGACGTGCTTGATGTGTTGGAGAGTCTGCTCTACAGTTCCCACTCCACACCGACAACCAAAGACTACGCATTAACAGCAGTCATGAAACTCAGTACACGATTTTCCTCTTCACTGGAACGAATCAAGACTATTATCAACAAATTTGAAGTGAACATGGATGTGGAATTGCAACAGAGAGGGGTGGAGTTTGGATCACTTTTCGGCAAACACGAGTCTATGAGAACTGCTTTGTTGGAGAGAATGCCTGTATTTGAAACGAAAGCATCCGAGCAAATACCAAATGGAGAAGTTCCAACACAACAGGAACCTGAGACTGTTACCAAAGAAGAAGTTGTCACTGAACAGAAACCAGCAAAACAAGCGTCTGAAACATTGTTGGATCTACTTGGTGGGGGTCCTGTGGCTGAACCAACGCCCGCCCCAGTCCAAACACCTGCTCCCGCGGCCTCACCAGGCGGAGGGCTCTTAGATTTACTTGGAGATCTGGATCTGGGCTCAACGAATGGAGGTCCTCCTCTCCAGAACATGATGGCGCCTTCGCCTGCTTTGCCAAACCTGTTGGACGGCGGAGATCTGTTAAATCCAGCACCTGTGGGGCTGCCCCAGCTGCAACAGGCTCCACCTCAGATAAATCACGAGCCATTCGCCTCGATAATTGAAAAACAGGACTTCTCTGCAGGTATCCCACCAATTACCGCATTTCAGAGCAATGGTTTGAAAATCGATTTCGCGTTTGAGAAATCTCCAGGCAACCCGTCGAATGTAGTGTCAATTATGGTAACAGCGACAAACTCGCTCGCCTTTCCAATGACTGACTTTGTATTCCAAGCCGCTGTGCCCAAGACATTCCAGCTACAGCTTCAAAGCCCGTCTGGTAACGTTATACCGCCGAATAACTCCGGAGCTGTCAATCAAGGTATCAAGGTCGCAAATCCTCAGCAGCAACCGTTACGAATGCGACTCAAAGTGACGTACAAGGTAAATGGAGCGCCAGTCAATGAACAAGGCGAGCATCAACATAGAATGCGAGCAAGAAGCAATGGTCAGAAAGTAGTCACCATTGTACAAATGTTTGTGACGTTTTCGCCGCCTTTAGCTGTTGTTTCTCCTGAAGCTCTCTGGTAG

Transcript

Protein

Uniprot

Uniprot term	Description
O43747	AP-1 complex subunit gamma-1 OS=Homo sapiens OX=9606 GN=AP1G1 PE=1 SV=5
Q5R5M2	AP-1 complex subunit gamma-1 OS=Pongo abelii OX=9601 GN=AP1G1 PE=2 SV=1
P22892	AP-1 complex subunit gamma-1 OS=Mus musculus OX=10090 GN=Ap1g1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02883	Alpha_adaptinC2	Adaptin C-terminal domain	Domain	Interproscan
PF01602	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008152	Domain	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Interproscan
IPR017107	Family	Adaptor protein complex AP-1, gamma subunit	Interproscan
IPR050840	Family	Adaptor Complexes Large Subunit	Interproscan
IPR008153	Domain	Gamma-adaptin ear (GAE) domain	Interproscan
IPR002553	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR013041	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22780	ADAPTIN, ALPHA/GAMMA/EPSILON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0005794	Cellular Component	Golgi apparatus	Interproscan
GO:0030121	Cellular Component	AP-1 adaptor complex	Interproscan
GO:0006896	Biological Process	Golgi to vacuole transport	Interproscan
GO:0035615	Molecular Function	clathrin adaptor activity	Interproscan
GO:0140312	Molecular Function	cargo adaptor activity	Interproscan
GO:0030117	Cellular Component	membrane coat	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12391	AP1G1; AP-1 complex subunit gamma-1	-	Membrane trafficking	ko04131	deepkoala