Gene detail

Detailed information of KAK2560489.1 in Acropora cervicornis

Genomic Location: JARQWQ010000036.1:852865...866436
NR annotation: XP_044169500.1, lupus La protein-like [Acropora millepora]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P05455	Lupus La protein OS=Homo sapiens OX=9606 GN=SSB PE=1 SV=2
P32067	Lupus La protein homolog OS=Mus musculus OX=10090 GN=Ssb PE=1 SV=1
P38656	Lupus La protein homolog OS=Rattus norvegicus OX=10116 GN=Ssb PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08777	RRM_3	RNA binding motif	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002344	Family	Lupus La protein	Interproscan
IPR014886	Domain	La protein, xRRM domain	Interproscan
IPR045180	Family	La domain containing protein	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22792	LUPUS LA PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0008033	Biological Process	tRNA processing	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11090	LA, SSB; lupus La protein	-	Systemic lupus erythematosus	ko05322	deepkoala