Gene detail

Detailed information of KAK2563289.1 in Acropora cervicornis

Genomic Location: JARQWQ010000026.1:1986346...2000620
NR annotation: PFX21521.1, p21-activated protein kinase-interacting protein 1-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAK2563289.1

ATGTCCCATCTCGCACCTTTCCTGTTCCAAAGTCATGGGGGAATCAATCAACTTGGAGGCCCTTTCGTGAATGGACGCCCCCTCCCAGACTACATACGTCATCGGATCGTACAGCTTGCTGCATGTGGCGTAAGGCCGTGCGAAATATCCAGAAGGCTTCTTGTCTCTCATGGCTGTGTTAGCAAAATCCTTGGTCGTTTCTACGAAACGGGCTCCATCCGCCCTGGATCGATAGGGGGGAGCAAACCTAAAGTTGCCACGCCCCCAGTGGTAAACAAAATTGTGCAGTATAAACAGCAGAATCCCACTATTTTTGCTTGGGAAATTCGCGACCGTCTGGTGGAGGAAGGCGTCTGTGATCGCGAAAACACACCGAGTGTGAGTTCCATTAATCGCATCCTCAGAAACAAAGCGGCAGAAAGAGCTGCACAGTATGCCATGATCGAGCGGGAGCGACAACAACTAGCTAGCATTTACGGCTTTCATCCATGGCCAGCTTCTATCTGTGACTCCAGCGTTCCTTGGTCGTGCCACTCTATGCCCCATCTTGAGGAATACCCTATTCACGAGTATGAAAGAAGGGGTCTGGAACCTCCTTCGGAGATGTCAATCATTACAACTCCCGAGAGCGGAAGCAGTCAAGAGGAATCAAGTCAAGTGAAAATCAAGGGAGAAAATGACGAAGAACAAGGCTCGAGGCAGTGCGCTTCAAATAAAGCGGCGACAAAGATGGAAAGAGAAGTAGCCATGTCGCAAGTGAGTGATAATGAACAAGACGAGACCGAGGCAATCCAGGAATTTGATGCCGATCTTGAAGACAGGGATTCAAATCAACGCAGTAACATTAACCACAGCAACGAAAATGTTGATACAGATAGAAAAGCTATGAAAAACAACCCCGGAAATTCAGGTTTGGTTCTCAAATCGCCGGGCAAAATGGCGTCGTCACCAGAAAATAAACAACTTACCACATTTACGCCATTCTCTCCTTGGAAGCTGTTATCCAATGTGCAACTGTTTAATTTGAAAGACCACAGAGAAATTGGTGCCTTGATGCAGCATGAGGTTGCTTGTTATGTTATTTCAGGTTCAATAAATTGTTTAACATTTCATGACAACACACACATGCTTAGTGCTAGCGAGGATCACACTATTAGTGTCTGGGAGTGTCAGAAATGGGAATGCTTGAAAGTCTTAAAAGGACACAGAACATGGAACCTTGTGACAGGAAGATCAGCTTATGTTACAAATATCAAAGAAGCTGCTCTGATTGTGAAGTGGTCTCCACTTGGAGATAGTTATGCTGTGGCGGTTGGGAACAAAGTAGTTGTATATAAGCTGGCAACAGCTGCTTTGTCATTTACAATGGAGTTCTCTAGATACGTGTTAGCACTGGAGTTTCTTTCTGAGAACATGTTAGCTGTTGGAGGAGAATTTGAAGGCGTAAAAATCTTGGACATTGGAAGGGAGCAGTGTATCCAAACATTAGAAGGACATGCCACAAGGGTCAAGGATCTTGGTACGACCGACGACTTGTTGAGGGAGGATAAGAAGCAGTTGTTGTTATTCTCAGTCTCGTCCGATGGAGATTTGAGATGCTGGGCTTTTAACCCCGAAAACTTTGAGGAGGAAGCTAAACTGGTGGCGAGATTTGAAGTTCCAGGTAGACCGACAAGTCTCACGGTTATTGGCCGAAAAACGCTACCCAAGCGGCTGGAAACAACGACGGACGAAACGAAAATGGCTGTGAGAAGCAAAAAGCCCTTGAAAGCCAAAAAGAACGAAGATAATGGAAAAACAGGTCAAGCGACTGTAAGAACTTCAGGTGATGAGCCCAAAAAGAAAAAGCTCAAGGCGAAAAAGAAAAAATCCACCAAGAAAAGGGATGAAGGCAGCAAGAAATGTGCGGAAGAAGAAGTCGTAGCGACGGATGGAGAAAAAGAAACGGAAGGAATGGAATTGAATGAAAGTGGAGGGAGTGAGCTAAACGATGACGAGGATTAA

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q90268	Paired box protein Pax-2a OS=Danio rerio OX=7955 GN=pax2a PE=2 SV=2
P32114	Paired box protein Pax-2 OS=Mus musculus OX=10090 GN=Pax2 PE=1 SV=2
Q02962	Paired box protein Pax-2 OS=Homo sapiens OX=9606 GN=PAX2 PE=1 SV=4

Gene family	Subfamily
Transcription Factors Family	PAX
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00292	PAX	'Paired box' domain	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001523	Domain	Paired domain	Interproscan
IPR043182	Domain	Paired DNA-binding domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR043565	Family	PAX family	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45636	PAIRED BOX PROTEIN PAX-6-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan