Gene detail

Detailed information of KAK2564656.1 in Acropora cervicornis

Genomic Location: JARQWQ010000022.1:698785...700946
NR annotation: PFX32940.1, Transposon Tf2-6 polyprotein [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAK2564656.1

ATGGAAGGTGGTCAACACACAGTGAATTTGATACGGGACTCACGTCGAGAAGCCCAGCAACGGAAAGGAAAGGAACCAGGCAAGGAGTCAAAAGAAGCGTGTTACAGGTGTGGTAATGTAGGACATTATGGTCGTGATCCCAATTGTCCTGCCAGAGGAAAGACTTGCAAGAAGTGCGGAGGTGCTAACCACTTTGCTCAGCAATGTAAAACAAAATCACCGAAACCTGCCAAGCCCAGATCTAGTGGGAAGTTAAAAGATACAAAGAAGAAAGTCAGGTACGTGCAAGATGTAGATGAGGACGAAGATGAGTATGCATTCATTGTGAAATCAGCGTCGCAACCCGGAAAGATTGAAGTGTTTATTGGTGGCATTTTAGTTGAGATGGTGGTAGACTCTGGAGCGAGCACAAATGTTATAGACAAACACTTGTGGTCAAAGCTGAACAAGAAGCCACTAGAAATACTAGGAACCTTCTCAGCATTAACGAAGGTGGGTGAAACTGTAGTCAAAGCTGAATTTGTTGTCATTGATGGCGAAGGAGAAGCACTGTTAGGAAGAGAAACTGCTGTACAGTTGGGTGTGTTACAGTTTGGTGTCCCAGTGTATTCATTGAAGTCGAAAGAAGAGATTTTACATGACTACAAAGGAATCTTTGAAGGTGTGGGAAAATTGACAGGCTTCCAAGTAAAGTTACACGTGGATCCGGAAGTACCTGCTGTAGCACAGCCAGTTAGGCGCACTCCATTTAGTCTCCAAGAGAAAGTCAAGGAGAAGATTGAGGAGCTTGTTGCCATGGATATAATTGAGCCTGTGGAAGGTCCGACTCCTTGGGTTAGTCCAGTCGTGGTAGTGCCAAAGCAAAATGACGAAATACGCTTGTGTGTAGACATGAGAAGGGCAAACGAGGCCATCATCAGGGAACGTTACCAAATACCCACAGTAGACGAAGTGCTCCACAACCTCAACCAAAGCACAGTGTTTAGCAAACTTGACTTGAAGTGGGGTTATCATCAGCTAGAACTCCACCCTGACTCCCAGAGTATCACAACATTCACGACTCACTGTGGACTGTATCGGTACAAACGTCTCATGTTTGGAATTAACTCTGCCCCGGAAGTGTACCAACATGTCATCCAGCAAACATTGCAAGGTTGTGAGGGCGTGGCCAACATCTCAGACGACATTATGGTCCACGGCAGGAGTACTGAAGAACATAACAAAAGGCTGCAACAAGTCCTAGAGAGACTGAAAGAGAAGAATCTGACATTGAACGCTGAAAAATGCAAATTCCACATGACCCAGTTGGTGTTCGTGGGACTTGTGCTGACCGACCTTGTGCAAGAGAGCCACAAAATGCCTCAGAGATTTATCCCAGACTTTGCCACAGTTGCAGAACCGCTACATAGATTAACTAAGAAAGGCATCCGTTTCGAATTTGGGGATGAGCAGAGAAAGGCATTCACTGAGCTGATGAAAAGGCTATCAAGTGCTGAAATTCTTGGATATTTCGACAAAGATGCCAAGACGCTAATAATAACAGATGCAAGTTCAGTAGGTCTAGGTGCAGTCCTCATTCAAGAGCAGCATGGGGTGAAGACAATCATCAGTTATGCCAGTAAGAGCCTCAGTGACGTCGAAAAGCGTTACTCACAGACGGAGAAGGAAGCTCTGGCAATCGTTTGGGCGTGTGAGCGTTTTCATGTATACCTATATGGGATCGAATTCGAGCTGTACACAGACCACAAACCGCTAGAAACGATTTACTCTAGTAGATCAAGGCCATGCGCACGGGTTGAGCGGTGGATCTTGCAATTGCAACCGTACAAGTTCAAAGTAAAGTACTTGCCTGGTGGGCAGAACATCGCCGATCCATTATCCCATTTGTCCCAGACTGAGGGACCCGTGAAAACATCATTAGCACACAAAATTTCAGATGACTTCGTCAAGTTTGTAGCAGTTACTGCCACTCCTAAAGCTATGACAACGCGTGAAATTGAGGAAGCCTCAGCAGAAGATGAAGAGCTCATCGAGCTTCGAGCATGTATAGATGAAGGAAGCTGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q09575	Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans OX=6239 GN=K02A2.6 PE=4 SV=1
P27502	Polyprotein P3 OS=Rice tungro bacilliform virus (isolate Philippines) OX=10655 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan