Genomic Location: JARQWQ010000019.1:870185...911796
NR annotation: CAH3174265.1, unnamed protein product [Porites lobata]
Species Acropora cervicornis · all data for this species · gene families
| CDS |
| KAK2565635.1 |
| Protein |
| KAK2565635.1 |
| UniProt accession | Description |
|---|---|
| Q86WG5 | Myotubularin-related protein 13 OS=Homo sapiens OX=9606 GN=SBF2 PE=1 SV=1 |
| Q6ZPE2 | Myotubularin-related protein 5 OS=Mus musculus OX=10090 GN=Sbf1 PE=1 SV=2 |
| O95248 | Myotubularin-related protein 5 OS=Homo sapiens OX=9606 GN=SBF1 PE=1 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002736 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10193 all species → | Telomere_reg-2 | Telomere length regulation protein | Family | Interproscan |
| PF02141 all species → | DENN | DENN (AEX-3) domain | Family | Interproscan |
| PF00169 all species → | PH | PH domain | Domain | Interproscan |
| PF12335 all species → | SBF2 | Myotubularin protein | Family | Interproscan |
| PF02893 all species → | GRAM | GRAM domain | Domain | Interproscan |
| PF03456 all species → | uDENN | uDENN domain | Domain | Interproscan |
| PF06602 all species → | Myotub-related | Myotubularin-like phosphatase domain | Domain | Interproscan |
| PF00130 all species → | C1_1 | Phorbol esters/diacylglycerol binding domain (C1 domain) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019337 all species → | Domain | Telomere length regulation protein, conserved domain | Interproscan |
| IPR001194 all species → | Domain | cDENN domain | Interproscan |
| IPR001849 all species → | Domain | Pleckstrin homology domain | Interproscan |
| IPR051970 all species → | Family | Telomere Length Regulation TEL2 | Interproscan |
| IPR002219 all species → | Domain | Protein kinase C-like, phorbol ester/diacylglycerol-binding domain | Interproscan |
| IPR022096 all species → | Domain | SBF1/SBF2 domain | Interproscan |
| IPR038528 all species → | Homologous_superfamily | TEL2, C-terminal domain superfamily | Interproscan |
| IPR046349 all species → | Homologous_superfamily | C1-like domain superfamily | Interproscan |
| IPR005113 all species → | Domain | uDENN domain | Interproscan |
| IPR011993 all species → | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| IPR037516 all species → | Domain | Tripartite DENN domain | Interproscan |
| IPR010569 all species → | Domain | Myotubularin-like, phosphatase domain | Interproscan |
| IPR043153 all species → | Homologous_superfamily | DENN domain, C-terminal lobe | Interproscan |
| IPR004182 all species → | Domain | GRAM domain | Interproscan |
| IPR029021 all species → | Homologous_superfamily | Protein-tyrosine phosphatase-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15830 all species → | TELOMERE LENGTH REGULATION PROTEIN TEL2 FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0007004 all species → | Biological Process | telomere maintenance via telomerase | Interproscan |
| GO:0042162 all species → | Molecular Function | telomeric DNA binding | Interproscan |
| GO:0050821 all species → | Biological Process | protein stabilization | Interproscan |
| GO:0051879 all species → | Molecular Function | Hsp90 protein binding | Interproscan |
| GO:0070209 all species → | Cellular Component | obsolete ASTRA complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K18061 | SBF1_2, MTMR5_13; myotubularin-related protein 5/13 | - | Protein phosphatases and associated proteins | ko01009 | deepkoala |
Genes whose expression across the transcriptome samples of Acropora cervicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora cervicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
