Gene detail

Detailed information of KAK2567372.1 in Acropora cervicornis

Genomic Location: JARQWQ010000014.1:458408...465183
NR annotation: XP_029197458.2, putative ATP-dependent RNA helicase DHX57 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAK2567372.1

ATGAATCGTGGACGCAGTGGGTCCAGAAGACCAAATCGCGGCGGTGGGCGTTTTAACAAACCAGGAACAGCCAACCGTGTGATTCTATCTTCTTCGGTGAAACACGATACAGAGGAAGTTGAGGAACTATTTGAGGACGATGAAGAATACGCGGAAGAATACGACGATTTTGTTGCTGCAGTACGTGATTCCACGACGGAAAAGGCCAATTCTAAGCCAGTAAAAACTCGAGTGAGGTCGAGAAACAGAGCACTGATTCAAACACTTCAAATGAGTGCAGATAATCAACGGATGATTAAAGAAGTCTTGCAAGACTTACAGGTATCCAGAGAGGGTCATGAATTGAAAGAAATTCGTTATTTCGATGATAGACAAATGAAGCGGAACGAGGATTACTGGAGAAAGGTTGGGGAGAGGAAACTGGTGGTTGAAGGCGTGGTTAATTTCTCTGAGGACTGTGACTCGGAAGCTGAAAGGAAAGACCAGATTTACAGCTCACATGCAATTAAGAAGTTAATTCAATGTGGTTTTGAGAGAACAAGGTGTTTGGATGCTCTAGGGGCGAGCGATGGAGATTTGGGTGCAGCACTGGAGTCTTTGCTTTGTAATTGTTGCGAACTTGAAAATATTGGACAGCAAAATATGGATTACAATGAAACAAAATTTCAGGAAGCAATAGAACATAGGCAGGATGAAGTATTGGCACTTGAATCAATTTATGGCGATGCCTTCACTGAAGTTATCAAGGATAGTATTTGGACCATTAATCTGGCTTTACCTTTCCTTCTAGACACATATAAACCAAAGGATACAACAACTCCTAGACACAAGAACAAACCAGATGATAAAAAAGAAATACCCAGAAATGTGTGTAGATTTTTCTTGAAAGGAATTTGCAAATTTGAGGGCAGGTGTAAATTTAGCCATGTAAGCCACAATGATAGAGCTTACTCTAAGGAAATGAATAGTGGTTCAGGGAAGCTAGAAGATGGTGAAACCCCTGGTGATTCTTCATCATTTGTCCTTGAAGTACGATTTCCCAAGAGATCTCTTTATCCATTTGAACCTCCTGTGGTTGCATTCTACTCCAAAAATGAATTGATTCCATCAGCAGGTTGTCTAAATGTCACACTGCGACTCATGAAGGAAGCTAAAGATTTATCAACTACGCAGAGTCCAGTAATCTTTTGTCTTGCCACCTTGTTGGAAAATGAAGAAGAAATCATGACATGTTTCAAAAGGCCTCCATCAGAGTTTAGTCTACCAATTAAAAAGACCATTACTCCTCCTAGCTTTGAATTGGTCGAGAATTGTATTGACAAGAATAGTGTACCAATAAAAAAGCCACAGATAAAAAAACATGAAAAGTCATCACAGCAACTGACAATTCAGGAGAAGAATAAGAAACTAAAGCAACAGTTTGAAAGATTAGAGTCTGTTGCAGGTTACAAGTCAGTGCTTGAAGAAAGGAAAAATCTTCCAGCTTGGAAATCACAGCAGAATATCATTGAAACTCTGAAAGAACACCAAGTGGTTGTTATCAGTGGAATGACAGGATGTGGCAAGACAACTCAGATTCCTCAGTTTGTCCTCGATAGCTTCATCAAAGAGGGACGTGGAGGGGAGTGTTTTATCATCTGCACACAGCCGCGTAGGATCTCAGCCATGGCAGTTGCGGAAAGAGTATCAAATGAAAGAATTGACAAAACTGGAGAATCTGTTGGTTATCAAGTCAGACTGGAAAACAAGCAGTCTTCAAAAACCAGCCTGCTGTACTGCACCACAGGAATATTATTGCGCCGTTTAGAAGGTGAATCAAGTTTACCTGGAGTGAGTCATGTCATTGTGGATGAAGTTCATGAAAGGACAGAAGAAGGTGATTTTCTTATGTTGGTTCTGAAAGACCTGTTGACAGTCAGACCAGACATTCGTGTTGTGCTTATGAGCGCAACTCTTAATGCTCAGCTTTTTTCGAAGTACTTCTTTGATGCACCTGTGATTCATATACCAGGGCGCACATTCCCAGTTATGGAGTTGTTTTTGGAGGATTCAATAGAGATGACAAAATTTCAAGTTGATCCAAGTTCTCCATATGCAAAGCCAATGAAATCTTCAAGTATTCCCAACATCACAGCTGGCAAGAAGAATCATATGCTGAAAGACATTCAGAAAATGGAGGATACTGTATCCGGATCAGACTTCAGACCTCCTGCTGCCAACATTGATGATCAGAATTTATCAGAAGACCAGATGGCATGGAGATATGCAAGTAAGGCTTGA

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q6P158	Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens OX=9606 GN=DHX57 PE=1 SV=2
Q6P5D3	Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus OX=10090 GN=Dhx57 PE=1 SV=2
F4ILR7	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana OX=3702 GN=At2g35920 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-CCCH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05773	RWD	RWD domain	Domain	Interproscan
PF00642	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR015940	Domain	Ubiquitin-associated domain	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR006575	Domain	RWD domain	Interproscan
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan