Gene detail

Detailed information of KAK2567564.1 in Acropora cervicornis

Genomic Location: JARQWQ010000014.1:2514392...2534814
NR annotation: XP_029202415.2, lysosomal cobalamin transporter ABCD4-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAK2567564.1

ATGGCTCCTTGCGGCAAACCTAAGGATGGAGCACCAGCTAAATTCAAACTGGATATGCTGTTTCTGAAGCGGTTTTTTCGGTGCTGGAAAATTATGTTCCCGGGATGGCTTGCTTCAAGTACTCTTCTTTTTATTTTATTGCTTGGAGTATCGTTGGCTGAGCAAATGCTGATTTACAATACTGGATTGATTCCAAGCAGATTTTATGAAGTTCTTGGAGATAGAGATAATGTGGGTTTTAAAAGTGTCGCACTTTCAGCAACTCTGATTATTATAGGCACTTCCGTGGGAAAAGTAGCAGTGAAATATGTATCTAGACTTCTTTACATCAGGTGGAGAGCCTTGTTAACATCACGTCTTCACTCAAGTTATTTTAAAAACTTAGCTTACTATAAGTTGAATGTCCTTCAAAGCAAGATTGACAATGTAGATCAGAGGATTACTCAAGATGTGGAGAGATTTTGCAGCAACCTCCGGAAATCAGTCGTAGTGTTTATCATTTCACCCTTCACCATTGCATACTATACATATCAATGCTACAACAGATCTAATCAACGAGCGGTTCAATGTGATTCTTGCGATGTTTGGTATCACGTTAAGTGTATGCAAATGAACACCCATGTTTATGAAGCACTAGCCAACTCGTCTTGCATATGGGAATGTGTTGTTTGCGGGCTTCCAAACTTCTCTAGCTCACTATTTGAATCAAGCACGACCAAAGTTACAAACTATTTCTGGCCTCTGGACACGGATTTATCTGATAAAAGTCACAATGAATCAATTTACACAGTGAATCAATCTACTCAATCTACACAAGCCATGTCGATTCCTCCTGGATCCCCGCTACATACCTCTTCGCCATCTCAAAGGAAACCCACCTGCAGCTCTAAGCTCAGAATACTAACAGTTAACTGTAATAGCTTGCAGTCTAAGTCCAAACAGAACCAACTAATAGATTTGATTGAGTCTCATAACCCTGATATAATTTGTGGGCAGGAATCAAAACTTGATGAGTCTATGAAGACAAATGAAATTTTTCCTCCACCTTTTCAAGATCAAGTATTCCGAAAGGACTTTAAAGCAGGAGAAAGGGGTGTCTTCGTTGCTGTCAAAAATGATATCCTGGCTTCCCAGATTGACAATTTGAACTCAACTGCTGACGCAGTGTGGGGGAAAGTTGAGATAAAAGGTGCAAGACCCCTGTTAGTTGCATCAGTCTACAGACACACTGACAATGATCCTACATCCATGGAACAGCTCAACTCCACTGTTGAGAGGCTGAATGATACTACACCAAATGCAGTGATTAGTGGCGATTTCAACGTTCCGAGTGTAAACTGGTCATCCCTAACAGTAAGTAATCCCCCTCAATATGGGCAGTCAGTAAATCAAGAGGTTCTAAATCTGGCTGTGCAAAATGAGCTGTACCAGATTCAGCATGAACGAACTCGAATGAACAATGTACTGGACCTAGTATTTGTGACAAATATGAACTTGGTGAACAATATCAAAGTATATCCTGGCATGAGTGACCATAATTGCATCATCACAGACATCAACTTGAAAGTCAAACATTGCAGGAAACCACCAAGAACTGTGTACAGGTTCAGTAAAGGAAATATGGATGCGGTCATGCACAACCTTGAAACAGAATTTGAACGCTTTGACCGGACAGATCCATCCAGCAGAACTATCGATGATAACTGGAACGATTTTAAAACTACTCTTATGTCATCATTAAACAAACATATTCCACGGAAAACACTGAGCACCAGAAAAGATATCCCATGGATGAGCCCTGAAATAAAAAGGAAAATCAGAAAGAAGCAAATGCTATACAACAAGCAGAAAAAAACTGGAAATGCAGAGGACAAGCGCAAGTTTAGAGAACTGCGCAGTATTGTCAAAAGAGAACTTGACATTGCACATAATCAGTATGTCCTCAATCTGCTAGACACCCGTGAGCCAGCAAGTGAGGAAGATAGTGGCAAAGCCACTATTGGAAAGAAGTTTTGGAATTACATCAAATCCATGAAAAGAGAGCATATCAGTATTGCTTCACTTAAGGACGTGACAACAGGAGAAGAAGTAACACATGCAGAAGGTAAAGTGCAACTGCTTAGTAATCAATTTGAGAGTGTGTTTACCAATGAGAACAGTGACACCCTACCTGATATGGCATCTAAACATTCAGGGTACCTTGGTCCTCTTCTCATCTATGGTTATTTTTTCACCGGAACAATAATCAATAAGCTAATAATGACTCCAGTTGTCACACTGGTTTTCAAGCGAGAAAGTCTGGAAGGTGACTTCAGGTTTAAGCACATGCATATAAGATCAAATGCTGAATCAATTGCATTTTACAGTTCTGGTAAAGTGGAGGAGAGGAAAACAAATTCAAAATTACGGGTAGACAATTTTAACATCATTTTCTCAGCAATAGCTAGTTCTCTATTTGCCCTGATGAAGTTTTCAATAAATATCTTTGATTATTTGGGATCAATCTTGAGTTACTTCATCATTGCTATTGCCATTTTTGCTGGAATGTATGATGACCTGTCATCAGTAGAACTCAGTGCACAGATTAGCCGGAACTCGTTTTTTGCAATGTACCTCATTAACTGCTGCACTCAGCTCCTTGATTTGTCCAATGATATTTCCATTGTAGCTGGAGTGGTTCACAGAGATCAAACCGTTTCTGCGCAAGATCTCGATTTGGAAATATCATATGGAAGGAACCTTCTCATAACAGGATATACAGGAAGTGGAAAAAGTTCTCTGTTTAGGATCCTTAGCGGCATATGGAAGCCCCTTTCAGATGGTACATTAAGGCAACAGATAACGTATCCATTTGAAGACGATATCCTACGTGATGACAACGAATCAGCGGGTGGAGAGGAGGAAAGACTTCTAGAGTTACTTGACATGGTTGGACTTAGATCTTTATATGAACGAGTGGAAGGATTTGACAACCCTGTAGATGGAAACTGGGAAGACATGTTATCTCCCGGTGAAATGCAGAGACTGTCTTTCGCCCGTCTGTTCTTCCACAGGCCGCTAGTAGCGCTTCTTGACGAGGCCACAAGTGCCTTGGACGTAGCTTCTGAAACCAAATTGTATTTGAAGTGCAAACAGCTGGACATCACAGTTGTGAGTGTTGGACAGAGGGACTCCCTCTGGAAGCTCCACGATTACAACTTGAAATTGGACGGAGAAGGAGGTTGGGAGTTCAAGAAAATCGAGAATAAGGACTGA

Transcript

Protein

Uniprot

Uniprot term	Description
O14678	Lysosomal cobalamin transporter ABCD4 OS=Homo sapiens OX=9606 GN=ABCD4 PE=1 SV=1
O89016	Lysosomal cobalamin transporter ABCD4 OS=Mus musculus OX=10090 GN=Abcd4 PE=1 SV=2
F1RBC8	ATP-binding cassette sub-family D member 1 OS=Danio rerio OX=7955 GN=abcd1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF06472	ABC_membrane_2	ABC transporter transmembrane region 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036640	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR050835	Family	ATP-binding cassette sub-family D	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011527	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11384	ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005324	Molecular Function	long-chain fatty acid transmembrane transporter activity	Interproscan
GO:0005778	Cellular Component	peroxisomal membrane	Interproscan
GO:0006635	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0007031	Biological Process	peroxisome organization	Interproscan
GO:0015910	Biological Process	long-chain fatty acid import into peroxisome	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0042760	Biological Process	very long-chain fatty acid catabolic process	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan