Gene detail

Detailed information of KAK2568568.1 in Acropora cervicornis

Genomic Location: JARQWQ010000011.1:4671353...4700853
NR annotation: XP_029194987.2, hapless 2-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAK2568568.1

ATGAATCTCGGGGATCCGTACGGTATTTCCGATTCTGATTCCGATCTAGATGAGGAAGAAGATCAGAAAAACTCCAGAAAGAAAAAGAAGAAAAAGGGTCCACAGTTTACCAAAGTCAACATCAATTTGTCCTTATCGGCATATGGAAATGCCAGAAGCTTTTATGATAAAAAGAGATTTTCCTCTAAGAAAGAACAGAAAACGATTGATGCGTCAGAAAAGGCCTTGAAATCAGCAGAACGAAAAACGAAAGAGACACTTAAAGAAGTAGAAACCACAACGCGAATAAAGAAAGCAAGGAAGACATATTGGTTTGAAAAGTTCCTGTGGTTTATTAGCTCTGAAAATTTCTTGGTCATCGGTGATCTGTACGTTCACGCGGACCTCCATGGCGCTACCAGCGTTATAATAAAGAACCCCAGCGGCCAACCCGTGCCTCCAAAGACCCTGAATGAAGCTGGCTGCATGGCAGTCTGTTACAGCGCCGCCTGGGAAGCGCGTATTGTGACCTCCGCTTGGTGGGTACATCATCAGCAGGTGTCCAAAACGGCCCCCTCAGGAGAGTACCTCACGACCGGGAGCTTTATGATCAGGGGGAAAAAGAACTTCTTACCGCCTTGTTACCTAGTGATGGGCTTCGGTTTTTTGTTTAAGTTGGATGAGTCTTGTGTCGAGAATCACGTCAATGAGAGACGAGTACGAACAGTGGAGGAGATCGAACCAATAGCTGCGGAGACTGAAACCGAGGAGGAGCTTACGATCCAGGACGAAAGCGGCGATGAAAATGAAACGAAAACGACTCCCAACGAAACCGCTGAACAAGAAGAAGACGAAGAAGAGGAAGAAAGTTTGTTTCCAGACACAAGCATCGACCTGCAGCTTACGAAGGAAGGAAAAGTGCAACTTCAGCGTGGTACAAATAAGCCACCAGATGGTGAAGAAGGGAAGGGAGCTTCATTAGACGGGAATAACCAGTCTTCAGGAAAACAGCGTCTGTCAGCAAAACAAAGAAGGGACAATAAAAAGAAAAGCAAACAGAGCAAAGAGGGTCTCTCACAAGAGAACGAGGGAAACGACAAATTTGAAGGGGAAAATAATGATGAAGAGATCAGGAAGAAATCCAGCAAAAGTACTGAGCAGCAGCGGCAACATCAACAACAACAACAACAACAACAACAACAACAGCAGCAGCAACTCAAGAGAGGCAAGAAGGCTAAGCTTAAGAAGATTAAAGAGAAGTATGGCGAACAGGATGAAGAGGAAAGACAGATGATGATGGAAATTCTCGCCTCTGCTGGACCAGCAAAGGAATCGAAAGCAGACAAAAGAAAAAAAGAGAAAAAGGGCAGCAAAGCGAATAGGCCGGTCAGTGGTAGACCGGCTTATAAAGATGCGCGACCAAACGTTGCGCACGTCGATGAAAACTTTCAGGTTAAACAAAATGCAAACTACATAGAAGTGGAATCCGGTGGACAATCTAAGGAAGAAAACTTAACAAATAAAGTCAACGAAATAAACTTGCGAGAAAATGGGCCCAACGGAAATAATGGAGAAAAAACGAATGACTCTGCTGAGAAAGACAGTGAAAAGAGCGAGTTAGTGACAGAAAAATCAAGCGACTGTAACCACGAAAAGGATTTGACGAACAATGAAGAACATGTTAATGCTACGGAGCCACCTGAGGAAAGTTCCACGACGATTGAGAAAGAAAATATTGTTATATCAGATGATGAAGAAGATCTTACGCCAAAGGATAACGACTTATCACGCTACATTCCTGGCAAAGTGAAAGTTTCAGCGCCAAATCTTCAGAAAATCAAGAAAAAAAAGATGAAGATACAAAACATTCTTGTGTTATTAGCTTGTTTACGGTCCACCGTGGACGCTGATTTGATCGCCAAAAGTAGCATCACTATATGTGAAAATACAGGTGGTGCTGGCGAAGATCCGATGAGCGTTGTGTATGAAAAAGCCTGTGAAAAGAAGCTGATTGTTACCATGACCGTTCGAAGCGGCCAGAACGGTACCGAGCTGCTGAAAACGGTGTCCAATGTAAGCAAAGTGTACGATGAGGTCGAAAGAGAACAAGCTCGACTGTACAATCCCTTTATAATAACTCTGGCTAAGACACCAACAGTCAATAACAGACCACAAGAAAAAGTTGTAATCAGTGACAATGCCATCCATACGTCAGGGTCACGTAATCTCTGTGACGATACCTGGGAAACAGGCGAGTCCACGTGTGGTTTTGATTATGACGCCCAAGGGAACAAAATATGGGATAGTCAGGGATTTTGTTGTTGGTGCTCTGAGCAGGACAAATGGCGCGGATCATTTAAAGACTCTACTCCTTTCAGTCGCGCTGGCCTCTCGTGTAAAGTCTTTGCCAAGGCACAGGCTGCCGCGCACTGCATGAAATATGACGATTTATGGTACACAGTGAATGAGCTCGGTCGATGGGAAATGGAGTTTGGAGTTCATGTCAAAACATTCGACCAAGTCTTGGAGAAAAAAAACAATGTTACAAAAGCCAAGTGGATACCTGGTGGTGAGATTGTTATTGGGCCTCACGTGCGCTTGGGAAGAGGCAAGTACGGCAGGGGCATCAAACCACACTATTTTCCAGAGAAAGTTGGCAAATTGGTTGGTCTCAAAGGTCGCCCAACAGATGGCCAAAAGAAAGAATTCATGCTTACTTATGAGATCGATGAGGTTATGACGAGTATGGTGACACTGCAGATCAGTGCGGATGACATCATTCTCATTTACAACAGGGCCTCTGGGAAAATCTTGAAAGCTTACGCTCAGGATTTTGAAGCTTTGTCTAAAGACGGCCATTTGTATGTTATCGTGCAGAACACTGGCTACGTCACCGCGGATTTCTCTGTAAGCCAATGGTGTTGTAGTCGTGTGTCGGAAAGGAGGAGGGTGTCAAGGGTAGAATCGAATAGAAGTGAGACAAGTGAAGGGAAGTGTAGATTAGAAGGGAGAAGGGTAGTGATATCTACGTGCTCTGGTGCGATAGGAAAATTCCGCGAAAAGTCAATATCCATAAATCCACAGAAAACCCACATGTTTACATTTACTATCCACGCATATAATGAAAAAGGAGGAAATAACTTTTGTATTGTGAGGCTTTTTGACGCTCGTCAAAAAATGGTGGACAGCGCAAATGTCACCTTCACGACAACAGCGCCGTGTGTGTGTGCCACAGGATGCGGCTGCAGTTGCTACGAAGGCGGATTTGAATGCGTGGACAGAGACGACAGAGACTGGGACGAGGAGAAACCAACCGAGAGTGGCCTGGACCTCGGTGGCGCCGTTGATATATGGACAAAAATTAAAAACGCTTTTAATAAAATCGGCGACGTTATAAAATTCTTAACGACACCTGCTGGCATCGGAAGCCTTGCCGGTATTCTCATTGGATTAGGAGCTCTAAAGGCTTTTATGGGTCTCAGGAAAAAAGGTTCTGCTTTAGCACGGTTCGGTTTGGGCGGGGTCAAGAAGGGAAAACAAGAGAAACGAGATCATAGGGGACAGATTGTTGTAGTGGAGTACAACGAAGAAGGCGATGAAATTGATCCTGAAACCAAAGAAGTTACCAAACCACGAAACAAGAAGAAGGAATTTATTCTCAACTTATTTTTCTTCCTCATTTTACCCTTCCTGTTACTGTTTAAACTTTGGAACTTGATTGCAAGTATTTGCTGCGCAAAATTGCTTGAGAAAAAAGAAGATACAAAAAAGATCAGGGAAGATGATAGCGCTTCCGCAAATCAAGGCTCCGAGGAAAATGTTTCAAAAGAGGAAGACATTATGAAAGAGGAAGGCTCGCGCCTTCCTGACAGCAATGCTAACAGCAAAGAGAACATTGCGCGAGGCAAACGAAGTCACAGCACGGATAGCAGCGGCAGCAATTTGGCCATCAAGAAGAGCAAACATGGAAGTGGTGATAAGATTGTAACTCCTGATGTGAAGGGGACAGCGACGGATAGTAAAAGCAACGAGCCTCCAGATGATCTTAAACCATTGCTTGACACTCTGGTTTATCATCATTTTTATGACACAGATGCCGTTGCAGGTGAACTTGAGGATCCTGGTGCGGAGTTCTCTTTGGCTGGTAAAATAACGTGTGTTCCGCGACCCACAAGTATTCAGTACAGATTTGACCTGCTCATGGCATTACAGATCTGTTACAATGTGAACGGAAAGCAAGTTCTGATGAGCTCTCCTGGAGTACTAGAACCATATCTGTTTTCTAAACTTATGACGGAGAAGGAAATACGAGAGCGCATTTCTTTAACACCTAATGCGCCCTGCTTGAATCTCAAATAA

Transcript

Protein

Uniprot

Uniprot term	Description
A7SIM4	Hapless 2 OS=Nematostella vectensis OX=45351 GN=HAP2 PE=1 SV=1
O60524	Ribosome quality control complex subunit NEMF OS=Homo sapiens OX=9606 GN=NEMF PE=1 SV=4
Q8CCP0	Ribosome quality control complex subunit NEMF OS=Mus musculus OX=10090 GN=Nemf PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05670	NFACT-R_1	NFACT protein RNA binding domain	Domain	Interproscan
PF10699	HAP2-GCS1	Male gamete fusion factor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008532	Domain	NFACT, RNA-binding domain	Interproscan
IPR051608	Family	Ribosome Quality Control Complex Subunit NEMF	Interproscan
IPR018928	Domain	Generative cell specific-1/HAP2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15239	NUCLEAR EXPORT MEDIATOR FACTOR NEMF	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0043023	Molecular Function	ribosomal large subunit binding	Interproscan
GO:0072344	Biological Process	rescue of stalled ribosome	Interproscan
GO:1990112	Cellular Component	RQC complex	Interproscan
GO:1990116	Biological Process	ribosome-associated ubiquitin-dependent protein catabolic process	Interproscan