Gene detail

Detailed information of KAK2569918.1 in Acropora cervicornis

Genomic Location: JARQWQ010000009.1:4898755...4932345
NR annotation: XP_044169232.1, receptor-type tyrosine-protein phosphatase F-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAK2569918.1

ATGGCTTCATTGCGTGTTACTCTTTTTCTGAGCTTTCTGTGGTCGGTGAATGCAAACGAACTCAGTCCTCCACAAGTGCCCAAGGGATATGTCACGGGTGACACAAGCATCAAACTGACTTGGGAGGTGAAATCTCCGTCAAAAGGAATTTTCGAGCTACGATGGAAAAGCGGCGGCAACGAATCGTCAATGCTGCTTCCTGGCGTGACTGGCAGCGTGACACTGAATCATCTTAAGGTTTACACGGGATACTCTTTTCGAATTCGACGAGGCTTCAAGAATGGAACGTGGGGTGCTTTCAGCAAGTATACCCGCGTATGGACTCCAGCGGGAGCTCCCACGGGCCCACCAGCCAACGTGACAGCGTTTAACAAAAGCGCCGTCGCCATCATGGTTTTTTGGGAACGGATTCCAAGGCCCCACCGGAATGGAATAGTGGTTGGTTACAAAGTGTGCTACAAAAGAGCTGATTCTGTGAACAGTGTTATGTACTGCACAGCGGTTCACGCCCAAGGAATAGAGCTTGGTGGCTTGAAGCCGTTTACGCCTTATTGGGTGACGGTGTTGGGTTACACTAGCAAAGGCGAAGGACCCACAAGTGAACCGGTAAAAGTGTGGACAGACCAGTTTGTACCATCCGCCGCACCGAAAGTGTTGTCTCTGTCGGCCAATAAAACAGCTATCGATGTCTCCTGGGCCCCAATACCTCGGAAGTACGTCAACGGAATCCTGCGAGGATATTACGTCATATACTGGAAAAGGCCACGCATGTCTCCTGATAATCACGTGATTCAAGTCAACCAGTCAACACTTCGTGTGGTTATCACTGGTCTCGAAAGGAACTCCACGTATGGGCTTCGTCTGGCGGGGCTCACAAAAGTTAGGGCTTGGCTTAGAAATGGTGCTCTTAGCCCTACATACAACGTAACTACCAAATACGGTCTACGCACTCCACAAAATGTGAAAGTATACAGCATGTGCTCGACCTGCCTGCGAGTGAGCTGGGATCCAGTATCTGTTCCCATAGACGAGAATCCCTTAACAGGCTATCGCTTGGTCTGCCACCAGGAGGCTTCTGGAAAGACAATCGTAAAAGTTGTTGGACCTACACAGTCAAGCACTAAGTTGAAATATCTTCAAAAATTTTCCTCTTACATTGTCACCGTGTCTTCAGTGGGGAAAAATGAATTGGGGGACCCTATCCCCAGCCGAGCCCCAAACGTAACTCAGGCTCGAAGCTCAGGCCCTCGCAGTATATTCATAGAATGGAGTCCAGTCCCTGAAACCTACTTGCACGGCATTTTGAGAGGATACTATTTGTATTACAAGAAGGGAACATCCAGGGCAAGACGATTTGCGATTGAGTTGGGGGTTGTGAAAACAATATCTGTTAACAAGACAGCAAGGAGTCTGGAAGTAACAGGCTTAACGCCCTTCACCTTTTACGAGGTCTGGGTGACTGCTTACACGAATGCGGGTTACGGTCCGGCGAGCAAGCCGCTGACAGTTATCACAGACGAGGATGTTCCATCTCGAGCTCCTCGAATTCTTGAAGTCTCAGCCGTAAGTCCGGAGTCTGTGTTTGTCAAATGGGAACCCATTCCATGGAGACACTTGCAAGGGCATCTGCAAGGTTACCTCTTGTTCTACAGTCAGAAGGATACAAGACGGCATGTTATAAATATCACTGTAAACTCATCTTTGACGCATGTCACCTTGGATCATATGAAACCGCAAACAGAGTATGTTGTGTGGATCGCAGGCTTTACAGGAAAGGGTGCCGGTCCAGACAGCGAAAGGGAGTTTGTTTCCACTCCAGTCGCTGTTCCAGGCAGGCCTTTGAATGTGCGAGTTGACGCAGAGAGCCCTCGGAGCGTGCGTATCACGTGGCAATCACAAACGGACTTGGCTGGCCAAGTCACCCGTTACATGGTGAAGTGGCGTCATGTGGGTAAACCCGCTGACTTAAACCTGAATGGACAAAAAGTTGTATCAGTGGGCTCTCCTTACCTCAGGGAGGCTCAAGTTGATGGACTGAAACCGTATAACATGTATTCGTTTGTGGTCCGGGAGGAAGTTCGGTCTAGCAACTGGAGCAAATTCTCTGCTGATTCGAAGGAGGAATTGCGCTTGGTTCTTCAGTGGAGAAAGCCAGAAGAAACTAACGGGGTTATCAAGAAATATGTTGTGCATTTTACTAACGCCAACGGGGAGAATATAACCTATACCGCATATTCTGAAGTGGACAAGGAGAATGTGACGCACGAATTCACTCTCCCTGATGTCGAGGCTGAGTATAAGATAAAGTGCACAATCCTGAATCTACGAAGTCCAAGCCAATCTGGATTAAGGAATTCTAAGCGTCTTATGGAGCCTATACAGAAACTATCGATCATTTCTAAGAGCTCACCACCAAGGCAACCCATTCCAGTGAAAGAGCTGGCAGCTCACTGCGCCCGTTTCCATGCCAACAACAACGCCTTGTTCATCGATGAGTTTAAGAGCCTTGAACGCGTGGCGTGGAAATCTTCTTGGGAAGCGAGTCACGCGGCCTTTAATAGAAGCAAGAACCGCTACTGCAATATCGTCGCATATGACCACAGTCGAGTTGTGTTGAAATCCGGCTACAACTCTCCGGCCAAGTACATTGCAACTCAAGGTCCTTTGAAGCACACTGTGAACGATTTCTGGAGAATGGTTTGGGAGAAGAATGTAAAGACCATTGTGATGATCGAAACACACGACAACAACGTAAGTACTGGCAGTAACACCTGTTCATTTGCTCCGAAGAATGATCCTGACTGTGAGAAATATTGGCAAGAAACAGAACCCACTGAGTATGGTCACGTGACAGTGTCACACCTCAGTAGTTGTGCCATGACGGACTGGGTCCGGGATGTGTTTCAATATCACTTCACTAATTGGCCTGATCACGGGGTGCCATTTGACACTTCATCGTTCTTGATGTTCCATCACAAACTGAGGGGCGCTTTGTCTGTTGATCCAGGACCTGTTCTAGTTCACTGCAGCGCTGGCGTTGGAAGGACAGGTTGCTTCATCGCCATCGATTCGTTGATGGAACAGATGGAATCCGAAAAGGTGGTGGACGTGTATGGGTTTGTTACCACGATGAGAAAACAAAGGAATTTTATGGTGCAAACTCAGACTACCATCTCATCAAACGAACTGGGCAGCGGTCTACTTTGCGTGTCTGGAGTTGAGCCCGACGTTGTTGAACAAAGGACAGCGGAGTTTGAGAATCTTCAAGTCTTTCCAGTAGATTCTCTGATGTTTAAGGATGCAATGGAGCATTGCAACTTGCGAAAGAACCGCTGTCAGGAGACATTGCCCTTTGATCACAACAGAGTCCGACTCAGTGTCATGCCGGGTGAACTTGGTTCAGATTACATCAATGCAAGCTTCATTGATGAACAAAGCACACGATATTGGCCAGATGAAAGTTGCAATTCATATGGAAGCATATACGTATCCAAGATTGACGAGGAAAGACTCGAAGATCTTACGCAGAGAGTGTTCAAACTTTGGCACCGAGGGAGCGCTGAAAGTCGGCTGTTATATCATTTTCAATACCGTCGTTGGCTGGGGAACACGCTCCCTCGTGCCCAGTCGTTTGTGTACCTTCATCAACAAGTCCACAAGATGCGGTCTGGGAATGAGCGCGAGGGCTCCATAGTTGTCCATTGCAGTATCGAACGATTGGAGACCGAGGACAGCGTTGACATTTTCCAGACTCTTAGATGGTTAAGGTCACAGAGAGCGAGACTTGTTACTAGTTTGGAACAGTACAATTACTGCTATGATCTGATCAAGAGTTACTTGGCCTGGAGAACCATCAATACAATCCAGAACGATTACGTTTGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q64605	Receptor-type tyrosine-protein phosphatase S OS=Rattus norvegicus OX=10116 GN=Ptprs PE=1 SV=2
B0V2N1	Receptor-type tyrosine-protein phosphatase S OS=Mus musculus OX=10090 GN=Ptprs PE=1 SV=1
Q13332	Receptor-type tyrosine-protein phosphatase S OS=Homo sapiens OX=9606 GN=PTPRS PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR050713	Family	Receptor-type Tyrosine-protein Phosphatases/Ushers	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46957	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05695	PTPRF, LAR; receptor-type tyrosine-protein phosphatase F	EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala