Gene detail

Detailed information of KAK2570040.1 in Acropora cervicornis

Genomic Location: JARQWQ010000008.1:3520850...3530735
NR annotation: XP_044178797.1, eukaryotic translation initiation factor 4B-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAK2570040.1

ATGCACTTTACACTGCTACCAAATTGGAAATCGTCGATGTCCAGCAAAAATATGAGTTACGTTGTGATAATGTTCATCGTCCCTCCCCTCCTCAGTCTTTACCACCCTTTCATCTCTCACATTGGCGCGAACTTCGTGGGAAGCAGTATCCGGGACTTTGACACGTTGATTTCCAAGATGGCGGAAACAGGTAAGAAAGCCAAAAAGAAAAAGTTAAAGGCCGTTCCTTTGACGGAGTTCTTGGCAAAAGACGAAAATGGACCTTCGATCACCCATTCACCTGTTTTCTCAGCGAGATCAACGAATTGGGCCGACGAAAGTGAAGGTCTTAGCACTGAAGAAATCAAAAGACGAGCTGCCATTGACAGGGCTGCCTTACCCACTGCTCCCAGAGCAGCAAGAGGTCCTGATGTAGACCTTTCAAAAATACCTGATGAGCCTCCATTCACAGCTTTTCTTGGAAACCTGTCATATGATGTAGACAGAGAAGACATATTGGAATTCTTTAGAAACAGCAAGATCACTGAGGTCAGACTTCCCCAGGACGGCAGTGGTCGTCTCAAAGGCTTTGGTTATGCAGAGTTTGAGGACAAAGCAGCCCTCATTGCAGCACTGACTTTAAATAATGAGCGTGAACGCGGTGAAAGAGATAACAGGAGCAACGAGCCCGATCGCACTGAAAGCGACTGGCGAAGACCCGAGTCTTCGTCGAACCAGAATGGTGATAACCACAGGGAGCGGTATTCCGACGACGGACCTCGGGGTGGATTCGACAGTGGTTCTCGTGATAGATCGGGTTACCGCGGATACGACGATGGACCACCTCGGGATAGATATGGTAGCCAAGGCTATGATGATGGACCTCGTGACAGGTGGGGTCAGCGAGACTACAGCAATGGACCCCCTCGTGAACGATCAGGGTACCGAGGGTTTGACGATGGACCTCGGGATCGTTCGAGTTTCGGATCAGGTTATGGTCGAGACCGAGGATTTGATGATGGTCCCCGGAGAGATGATAGTTATGGAGACCGAGGAAGCCGATTTGGCAGTGGATGGGATGTTGACGATAGACAAAGTGACCGCGGTGGTTATGGCCGAGAAAGATACGACAATCGTCGATATGGCGATAGGTACGGTGGAGATCGTGATCGTGATCGTGGAGGCCGAGATCGGTTCGATGATCGTCGTTATGGAGATCGTTATAGTGGTGACCGGGATCGTGGAGGCGGATTTGGCCGAGACCGCTTCGAGGATCGTCGGTACGGAGATCGAGATCGTTATGACGACCGCCGCGACCGCTTCGAGGATCATCGATATGGAGATCGGGATCGTTATGACGACCGCCGAGACCGCTTCGAGGATCGTCGATTTGGAGATCGGGATCGTTACGACGACCGTCGAGGAGGTGACCGTTATGAAGACAGAAGCCGTGATTATGATGGTAAAGATTGGAACAGCGGGCGCGATGATGATCGCGCCTACGATGCGAGAAGAGAGGATGACAGAGAAGCAAGAGGAGGAGTGAGAGAGAGACCCAAGCTGCAACTGCAGCCTCGCACCAAACCAGTGGAAGAAAGCAAGGATGAATCAATAGCCAGTAGCTCTGTGTTTGGAGGCGCAAAACCCGTTGACACGGCGTCTAAAGAGCGAGAAATCGAAGAAAAACTAGCGCGACAGAGACTCGAAGATGAAGCTACGATAAAACAGGAAAGAGAGAAACAGAGGGAACGTCGTGAACGCGAAGAATGGCCACGAAGTTCCGGGGGCGGAAGGCAGCGACGCGATAGCAATCGATCAAATGAAGGAGACAGGGCACCGAGAGAACGACGGGATAGTTCCGATCATCGCAGCCGTCATGACAGTGCGAAGTCTGGTGACGAAGGAACTTCAGGTAAGGACGGTGAGCAGTCCACGCATTCCGGCCCCCGCGTGACAAAGAAAGAGATCAAAGAAACGCCCAAAGAAGCGCCGAAAGAAGCGCCTCCGCCAACCGTTAATGTCTGGAAAAGAAGGATGGAACAGCAGAAGGCAGCTTCTGTGGCAGAGAGTGAACCAAAAAGCCCCAAAGCCGAGGAACAAAGAGTGGAGTTTAATGTGGACAGTGCTACTATGACTGTCTCGCCTGTCTCCACCTCCCCCGAAAAGAAGGCCTTTGGAAAAGCAACTTCCGTTCCAAGAAAAGAAAACAGTGGTCCCCCTAGAGGGAGAGGGAGGGGCGGGGATAGATCTAATGCTAATGGCCCTAGTCAGGAACGAGGAGTAGGAAGAGCTGCCCAGAAAGAAAAGAAGGAAAGGAGGCCAGCCGAGCCAAGGAAATATGAAGAAACACCGCAACCGGTCTTTCACACTGCAAGCAAGTTTGCGCTTCTTGAGGATGAAGATACAGATTCAAAGGACGCAGAAGAAGTTGAGACCGTAAAGGAGCAAACATGA

Transcript

Protein

Uniprot

Uniprot term	Description
P23588	Eukaryotic translation initiation factor 4B OS=Homo sapiens OX=9606 GN=EIF4B PE=1 SV=2
Q8BGD9	Eukaryotic translation initiation factor 4B OS=Mus musculus OX=10090 GN=Eif4b PE=1 SV=1
O14369	Probable RNA-binding protein sce3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sce3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03258	EIF4B; translation initiation factor 4B	-	Translation factors	ko03012	deepkoala