Gene detail

Detailed information of KAK2570235.1 in Acropora cervicornis

Genomic Location: JARQWQ010000008.1:2010353...2017002
NR annotation: XP_029207473.2, lysine-specific demethylase 2B-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAK2570235.1

ATGGGAAATACCCAGGGAAGAAGTCCAGAAGAAATCAAGGGAAAGAAAAAGGGAAAATTGCCAAAAAGTCACCATGGAAAGCAGTTCTCACCACCACAAGGACGGAGTGGAATCTCACATCAGAATGGTGGGATTGTAAATAACACTAACCATAGGGAAAGCTCCATCCACTTGCCGCTAAAAGAATTTGAAGTTCCTGATTTCTTGAAAGATACTCAAGCTCAGCCACGTCAAGGAAATAGCTCTCCAGTTGTCAAGCGGGATCTGAAGGATTCAGATTTCTCAACAATGAATGGATCAGGATTAATGATACCTAGGAAGGAGTTAACAATTCCAGATTTTCTCAGGAGCAAGGATGAAAGTGACAGAAACAGTGCTGTAGAAAATCAAGGGAGAGGGCAGAAGCTTAAGGCTTCCCTTGACAGAACACCAAGAAATAGTGAAAGAGATTACAGGAAAATGAATGGAGAACACAAAGCACATGAACACTCAACTGAACAAAAACAACACCAGGAAGGAAAACGCATGCCGAAACTGCAGGAGAACAGCCAGGTTGTCGAAGGAACAATTATTAGAGGGCACAATGGTACAAGTGCTGACTCGCTAGAAAGGCTAGGGCCATCTGCAAAGAGTCAGTTAAAAACTGTTAATCGACAAAAGTCACATAACTGGATGGAAACTGACAGCTTGCAAAGTTCTTCTTCACAATCACTTACTGAACCAATTTCTACCATGTCATCTGACAAAGATAAATTCAGTGTTTCTGTGCGGGATCATAGTGAGCTTGTTCAAAAAGGAATTATTTCCAATGGAACTCTTTCCTCTGTTGGCAAGTATCATTTACATGGTGCTGCTGACAGTTATGTTGAAGACGATGTGGATTCACCTCTATCCACAGAGAGAAGCAGTAATTTCAATTCCAGCATTGGTTACAATGAAAGCTCGCCTGAGCAATCCAATCGTAAGGTTAAGAGGAAGGACTCTCTGCAAGCTCGTCTCCGCAGCAGAATTACTAAACAGGAGAGAGCAAACAAGGCTGTTCCAAGAGTTAGGTATGACAGTGACTCCACTACAGTCAGTGATCACAGTGCATTCGGGGATGTCACTCCGATGTACTCTTCCTGGAGAAAATCAACTCCTGGATTAAATTCGTTGAATGACCTTCCTGAAGATCTTCTGATGTTCATCTTTTCTCATTTACCGTCAAGAGATCTTTGCAGGGCATCGGGTGTATGCTCCAAATGGCAGAAATTGTGCTGGGACCCATTGCTCTGGTCAACCATTAGTATTACTAATTACCAAGACAGTGATATCAATAAAGTGCTTCGAACCATCTTGACCAAGTTAGCAATGGACACTCAGGGTTATTGCCTCAATGTACTCACAATCAAATTGAATGGCTGCGAACTTCTGGCCGACAAAGGCTTGGGATTTATTGCGCGATTCTGTATCGATCTTGAAGGCCTCGATGTCTCTGGTTGTTGTTGTATCACAAGCAAAGGACTGCACGAGGTCTTAACAAACTGCCGAGCAGTTACTCAGCTGAATGTCACTGGGTGTACTTGTGTCAATAGCTTATCAGCTCCTGTCGCAGTAGCCAATGGTTTGGGCTTGGGGCAGAATGGTACAAGCCTCAAATTGAGGCACTTAGATTTGAGTGACTGTGCAGCTTTTGATGATCTGGGTTTGAGAGTTGTCAGTCTGAGCTGTGGATTACTAGAAAGCCTCTACCTTCGCAGATGCAATCGTGTTACAGATGTTGGCATCAAACACGTCGCTCAGCACTGTTCTCGGCTTAAAGAACTGAGCATCAGCGACTGTTTTAAAGTGAGGGATTTTAGCTTGAAAGAAATAGCCAAGCACTGTGCAGGCTTGAAGTATCTTAGTGCAGCAAAATGTCCAGTGACTGATACTGGCATAAAACTCATTGGAAAACACTGCATTAAGTTGAAGTACGTGAACATCAGAGGCTGTGAAGCTGTGACAGATGTCGGCATAACTCACATTGTTCAAAACTGTTTGAAACTGAGATCGCTTGATGCCGGCAAGTGTGACATCACTGATAATGGGTTACACATCATCGGCATTCATTGCCCTCAGCTTAAGAAACTGAGTGTGCGGGGGTGCGATCGTGTGACAGACATGGGCATCAGGACCATTGCTGCACAGTGTTGTAGCTTGCAGTACTTGAATGTACAAGAATGCAGCTTGAATTACAAAACTTTCATGTACATCAGGGAGCATTGTAAAAACTGTGTTATTGAACACACCTGTCCTGCATTTTTCTAG

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|F-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR050648	Family	F-box/Leucine-rich repeat	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10273	FBXL7; F-box and leucine-rich repeat protein 7	-	Ubiquitin system	ko04121	deepkoala