Gene detail

Detailed information of KAK2570359.1 in Acropora cervicornis

Genomic Location: JARQWQ010000008.1:3847629...3859993
NR annotation: CAH3179220.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAK2570359.1

ATGAGAAACCGAAGACTGTTTATCAAAGTCGTTATTCTGACTTCAGTTTTCTGGCTCGCAGTGGATATTTTATACTACTTAACTACTATGAACAATCAGTTGAATTTTTTCGAACCGGAGTCGTTTATTCCGTCATCATCGACAGGCGTGCAAAGAACTGGAAAGAGGTCACGCATTGAAAGTGGCGTAAAACAAAAGCGACGAAAATATACCAACATAGGACCGTATTTTAACGACGTTATTCAAGGACTTGGAGAAAACGGAGAGCCAGCGTTTTTGCCGCCAATTTTCAAGGACGAGGCTGAAAACGTGTTCGACAATCATTCGTTTAACGTTATCCTTAGTGATCATATCAGTCTTGATAGGACTCTAAAAGATGTCAGAGGACCAAAGTGTCGTTCGAAACACAGCAAGTATCCTACAGAACTACCAACCACAAGCGTAGTAATTTGTTTTCATAATGAGGCATTGTCTGTGCTACTGAGGACAGTTCACAGCGTCTTAAATCGCTCGCCACCTCATCTCCTTGCCGATATTATTCTAGTTGACGACTTTAGTGAATATGAAAATCTCCAAGAACCACTTGAGGATCAACTGCAGCAACTTGAAAAGGTCAAAGTTGTTAGAATGCCACAGCGAGAAGGTCTTGTACGAGCGCGACTGCGCGGAGCCGAGGTGTCTCGGGGAGAGGTTTTAACTTTTCTGGACTCGCATTGCGAGGCTACCGAGGGTTGGCTTGAACCACTCTTAGTTCGAATTGCGCAGAATCGATCAAATGTCGTTTGTCCAGTCATTGAAGTGATCAATGCCGATGACTTTGGATACCAAACGTCCGCTGTCATTCACGAGCGAGGAGGGTTCTCTTGGGATTTGTTTTTCACGTGGAAAGCAATTCCCGAGGAAGAGAGAAATAGACGAGAAGACGAGACAGACTACATAAGGCAAGTTACAAACTTTGGCGTCTTGTTGTTGAGTCCTACCATGGCAGGAGGTCTGTTCGCAATGCACAAACAATATTTCTACGATCTGGGGTCGTATGACGATCAAATGGACATATGGGGAGGAGAAAACCTTGAACTATCTTTCAGGGTTTGGATGTGTGGAGGGCAGCTTGAGATTGTTCCGTGCTCACGTGTTGGTCACGTGTTTCGTAAGTACACTTCCCCTTACAAGTTTCCTAAAGGGACAGAAGCAACTTTAGCAAAAAACTTCAACCGCTTGGCTGAAGTCTGGATGGACGAGTACAAGGACCTTTATTACAGGAGAAAAAGTAAAGAAGAGAGAAATATTGACATTGGTGACATCAGCGAACGTCTGGCACTACGAAAAAGACTGGGGTGCAAAGATTTCAAGTGGTATTTACGAAACGTGTTTCCTGATATGGCATCAATCCGAAGTCTAGCATATTCCCTTTGTGTCGATACACTCGGAGAAAAAGGTTCAAGAATCGACCAAGTCGGCCTATACAGCTGTCACGGCATGGGAGGAAATCAGTTCTTCACTTTCACAAAGAACAACGAAATACAATTTAACGACGACAAGTGCCTGGATGCGCCGCGTGGTGAACCCGGAACCTTTGTTGAAATGATCACGTGTCATGGACTAAAGGGAAACCAAGAGTGGAAACACAACAAGAGAAAATTTTGGGAAGTGATTTCTGACGAGCATGGTATTGACGGATGCGGAACATACAGCGGGGATTCGGACGTTCAACTTGAACGAATCAATGTTTACTACAATGAAGCTATTGGAGGAAAATATGTACCGCGAGCTGTACTCGTTGACTTGGAGCCAGGGACTATGGATTCAGTCAAAGGGGGTCCATTTGGACAGCTTTTCAGGCCAGATAACTACGTGTTTGGTCAAAGTGGAGCTGGGAACAACTGGGCCAAGGGACATTACACTGAAGGAGCAGAGCTAGTTGACTCGGTTCTCGATGTTGTTCGTCGCGAAACTGAAGGTTGCGACTGCGTGCAAGGCTTTCAACTAACGCATTCCCTTGGGGGTGGTACTGGCGCAGGCATGGGAACCCTCCTTATTTCGAAAATTCGAGAAGAATATCCAGATAGAATAATGACGTCATTTAGCGTGGTGCCATCACCCAAGGTTTCTGATACAGTTGTCGAGCCGTACAACGCAACGCTGTCGGTTCACCAGTTGGTCGAGAATACAGATGAGACATTCTGTATTGACAACGAAGCTCTGTATGACATCTGCTTTAGGACGCTAAAGATGACGACGCCCACATATGGAGACTTGAATCATTTGGTATCCGCGACAATGAGTGGTGTCACAACCTGTCTTCGCTTCCCTGGACAGTTGAACGCTGATCTCAGAAAGCTGGCTGTCAATATGGTCCCATTCCCTCGCCTTCATTTCTTCATCCCAGGCTTCGCGCCGCTGACCAGTCGCGACAACCAGCAATACCGCTCCCTGACTGTGAACGAGTTGACTCAACAGATGTTCGACAACAAGAACATGATGGCGGCATGTGATCCAAGACACGGCAGATACCTCACAGTAGCCGCCATGTTCCGGGGAAAGATGTCCATGAAGGAAGTTGATGAGCAGATGCTAAATGTTCAAAACAAAAACAGCTCGTACTTTGTGGAGTGGATTCCAAATAACGTGAAAACTGCAGCATGTGACATTCCACCTCGCGGTCTAAAGATGTCAGCTACTTTCATAGGCAACAGTACCAGCATTCAAGAACTGTTTAAGAGAATCAGCGAACAGTTTACTGCCATGTTCAAAAGAAAGGCGTTTCTTCATTGGTACACAGGTGAAGGGATGGACGAGATGGAGTTTACTGAGGCAGAATCCAACATGAACGACTTGGTGTCCGAATACCAACAATACCAAGATGCAACAGCTGAGGAAGAACAATTTGATGACGATGACGAAATGACCGAAGAGTGA

Transcript

Protein

Uniprot

Uniprot term	Description
P11833	Tubulin beta chain OS=Paracentrotus lividus OX=7656 PE=2 SV=1
P36221	Tubulin beta-1 chain OS=Notothenia neglecta OX=202063 GN=tubb1 PE=1 SV=1
Q3MHM5	Tubulin beta-4B chain OS=Bos taurus OX=9913 GN=TUBB4B PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03953	Tubulin_C	Tubulin C-terminal domain	Domain	Interproscan
PF00535	Glycos_transf_2	Glycosyl transferase family 2	Family	Interproscan
PF00091	Tubulin	Tubulin/FtsZ family, GTPase domain	Domain	Interproscan
PF00652	Ricin_B_lectin	Ricin-type beta-trefoil lectin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008280	Homologous_superfamily	Tubulin/FtsZ, C-terminal	Interproscan
IPR035992	Homologous_superfamily	Ricin B-like lectins	Interproscan
IPR018316	Domain	Tubulin/FtsZ, 2-layer sandwich domain	Interproscan
IPR001173	Domain	Glycosyltransferase 2-like	Interproscan
IPR000217	Family	Tubulin	Interproscan
IPR000772	Domain	Ricin B, lectin domain	Interproscan
IPR045885	Domain	N-acetylgalactosaminyltransferase	Interproscan
IPR029044	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR003008	Domain	Tubulin/FtsZ, GTPase domain	Interproscan
IPR002453	Family	Beta tubulin	Interproscan
IPR036525	Homologous_superfamily	Tubulin/FtsZ, GTPase domain superfamily	Interproscan
IPR017975	Conserved_site	Tubulin, conserved site	Interproscan
IPR023123	Homologous_superfamily	Tubulin, C-terminal	Interproscan
IPR037103	Homologous_superfamily	Tubulin/FtsZ-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11675	N-ACETYLGALACTOSAMINYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0007017	Biological Process	microtubule-based process	Interproscan
GO:0004653	Molecular Function	polypeptide N-acetylgalactosaminyltransferase activity	Interproscan
GO:0005794	Cellular Component	Golgi apparatus	Interproscan
GO:0006493	Biological Process	protein O-linked glycosylation	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005200	Molecular Function	structural constituent of cytoskeleton	Interproscan