Genomic Location: JARQWQ010000006.1:2315006...2316037
NR annotation: XP_015770047.1, PREDICTED: putative deoxyribonuclease TATDN2 [Acropora digitifera]
Species Acropora cervicornis · all data for this species · gene families
| CDS |
| KAK2571372.1 |
| Protein |
| KAK2571372.1 |
| UniProt accession | Description |
|---|---|
| Q93075 | 3'-5' RNA nuclease TATDN2 OS=Homo sapiens OX=9606 GN=TATDN2 PE=1 SV=2 |
| P0AFQ9 | Uncharacterized metal-dependent hydrolase YcfH OS=Escherichia coli O157:H7 OX=83334 GN=ycfH PE=3 SV=1 |
| P0AFQ8 | Uncharacterized metal-dependent hydrolase YcfH OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=ycfH PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008154 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00098 all species → | zf-CCHC | Zinc knuckle | Domain | Interproscan |
| PF01026 all species → | TatD_DNase | TatD related DNase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001878 all species → | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR032466 all species → | Homologous_superfamily | Metal-dependent hydrolase | Interproscan |
| IPR001130 all species → | Family | 3'-5' ssDNA/RNA exonuclease TatD-like | Interproscan |
| IPR018228 all species → | Conserved_site | Deoxyribonuclease, TatD-related, conserved site | Interproscan |
| IPR036875 all species → | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46363 all species → | DEOXYRIBONUCLEASE TATDN2-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0016788 all species → | Molecular Function | hydrolase activity, acting on ester bonds | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03424 | tatD; TatD DNase family protein | EC:3.1.21.- | Enzymes with EC numbers | - | deepkoala |
Genes whose expression across the transcriptome samples of Acropora cervicornis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora cervicornis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
