Gene detail

Detailed information of KAK2571387.1 in Acropora cervicornis

Genomic Location: JARQWQ010000006.1:4874487...4904361
NR annotation: XP_044172182.1, regulator of nonsense transcripts 2-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
A2AT37	Regulator of nonsense transcripts 2 OS=Mus musculus OX=10090 GN=Upf2 PE=1 SV=1
Q9HAU5	Regulator of nonsense transcripts 2 OS=Homo sapiens OX=9606 GN=UPF2 PE=1 SV=1
F4IUX6	Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana OX=3702 GN=UPF2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02854	MIF4G	MIF4G domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039762	Family	Nonsense-mediated mRNA decay protein Nmd2/UPF2	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR003890	Domain	MIF4G-like, type 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12839	NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000184	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005844	Cellular Component	obsolete polysome	Interproscan
GO:0035145	Cellular Component	exon-exon junction complex	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan