Gene detail

Detailed information of KAK2571388.1 in Acropora cervicornis

Genomic Location: JARQWQ010000006.1:4904343...4909780
NR annotation: XP_044172183.1, uncharacterized protein LOC114963231 [Acropora millepora]
Species abbreviation ACERV · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

KAK2571388.1

ATGGCGGCCAATCGACATTGCTGGCAAAGTTTTAACTTTCCATTTTCCGAGCAAGAAATCGTCTCGCAGTCGTTTCTTGACTACAGCAGCTCTTCATTGTCAAACATAGATTTGGATGAAGACGGTAAAACTGTAGTAATCTTTCCCAAGAAGTCACATAACTCGCGATTACGACTGGAAGCAAATTATCCAAGTCTTCCATTCTTGGCGCCAAATTCACCTTCTTGTTCTTTGTCAGTGAAGACAATGGTCGATTACAACTCAAGACATGATGTCGTCTCTGACATTTCTTCCATCCACTTGAGCAATTTTTCGACCTGTCATCCTGATGTTATGTACGGAACTGTGTCTGGTCTCTTACAAGAGGAGCTGAATTGTTACCCCTGGGGAATATGTGCGAATATTCGTCCAAGCATCGATCTTTATTTACCTTGGAATCGTAGACAAACCCACTGCAAGATGTGTTCAAAACTTTCCAAGACTGCCCAGCGTCGCAAAGGCAGTGGTACCCAAGCAATAATGCAGCAATTGAAAACAACCTTGTCGGACATCTCGCCGTCATTGCTTGATGACTTTCTCCAAGAGAGTATCACTTCAGAACTCTCTCAATTTCACTTTGATCTTTTTATGGGAAACAGTTTGGCTTGTCATTCATTAAATGCAGAACAGCAAGCCATTCTTCTTTACCCCAGTGGTAGTGGTTTGGATGTTTTCAACTTTGCAAAGATCTCACAATTTGCAAAGGCAACAGACCTTGATGTTGATGACACAATATTTTCTGCTAATCCAATATTATCAAGACAGCAATTTGCACTTCAAGGTGCAATAAAACAGATTGACATTTCCAGCCATTCTAGTGAGGATGTTATTGTTGGAATCAGATCACAATACAACTGCTCATTTTTTCAGAGCTACCCTAATTCATCGACTGATAGAAATCTGCCACCTGTGAAGCTGCTTGAGACAGTAGCTCTCACTAAACAAGCCATGTGTCTTGCTGTCAGCCCATTTGTTCCTGGTGAGGCTGTGGTTGTGACAGAAACTGGTGCTGTTCACAGCTGGAGATGTGGTCAGGAATTAGTTACAGTGTCTTCAGCAACAGAACTGTTCAATGTCAACTGTGTTTCAGAATGGTACCAATGTGTGTTCGCTGGGAATCCTCAGTGCATTGCATTAGCAAACCCAAAAGCTGTGCACTTAGTGGACTTTCGTGCACGGGCAATGTCCAAAAGGTTTTTCTTTTCCATTCCATCTTCCCAAGTTGATTCCTTTGAATGCATAACATCGATTCAACGTCACCCACAAAATTGCCATCACCATTTCTTGGCCACAGATCAGTCTCTGATGATTCTAGATGACAGGTATCTTCAACATCCAGTGCTCAAGTGGAGGCATCACATCGAAGATCTGGTTCAATTTATAGACATAACTTGTAATGCAATCCCTGATTGTGACGACACAGTTGTGCTAACTTCTGGCTCAAAACATCATCAAACACACTGCTTTCAGTACTCTGGCACTAAAGGCCATTCGGACAAGGTATTAACTGCCTGTAGAGGACAAACATATGTTCCCCCAACATCAACATGTCTTCGTTGGAAGGTGTCATCTTACAGTGAGTGGTACTTTTCTGGACTCAGTAAAGACTTGAGTTTTTCACAAGCAGCAGCGTCACGACTGTCACAGCCACTCGTAGGTGTATGTTCCATGCCACACACCTTTCATCCTCACGGGGGATTCACTGTCTTTCAGATGTCATCTGTTGGTGACTTATTTTATCAGTCATTTTTTGCACGAGAAATGAGAGATGATGAAAATGTGTTAGAAAACAAGCAGAAACAGGAGCTTCACTCTGAAGCCAAAGCATTGTGTCAAAAGTGGATCGATGTGATTGATCAAGGCATTGGGGATATTAGAGAAACAGAATGTGAAAGATATTTTGAGGAAGGAGAAGATAAAAGAGAAATTTGCCTGGATTTTCTGTTCTTACCAGAACCTCATTCCAGTTGTACATTGTGCAATGACAGACAGATTGAAGAAATGGATGAGGGTTCAGAAGATTCAGGCATTTGTGAACGGTGTGGGTTGGACATAAGTTTCAGTCGCAAGCTTGTTGAACATGAAAAAGGTAACAAAGTTGTTACAAAAAGTAGTTTAGGCATTCAACGTGAATTGAAGGACCTACAAATTAATCCGGATATTAGCAAGGCAACTGATCCCCTCAGCAAAAGCCTGATGTTGAATTGGAACAGTGATGAGCCAATACCAATAGATATGGATGGACTAGGGTATGAACCACATGGTTCCAATGATGAACCTATGTTGGCAACCAATGCAGAACCAATGTTGATGTTCAGTGAGGTGTTCTCACAAAACAACAACAAAAAGAGAACAGCAAGCAGTGGCAAACCTGTACTTCAGCCTACTGATAGGCAAACACCAGTGAATGACGTTGGACCAGTATTAAGCAAAAGAAAACCAATGTTGGATAGTAGCAACCAAACAATGTTGGTAAAAGGTGTTGAGCCAATGCCAGAGGCAATATTGCAGGATGATGAAAGTAAGAGTAGCAGAGATAAGAGTAAAATGAATCCGATGTTGCCTCAGGTTCAATATCAAGAAGGAATGCAACTTGAGAATTCTCCAAGTACAAGAACTTCACAAAATCAAGATTCTAAAAGTTCACACAGGAAGAGAAAACAAAGCAGTCATATTATGGGATTTTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005742 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20641 all species →	TAF1C_beta-prop	TAF1C, beta-propeller	Repeat	Interproscan
PF20642 all species →	TAF1C_HB	TAF1C, helical bundle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049087 all species →	Domain	TAF1C, beta-propeller domain	Interproscan
IPR049090 all species →	Domain	TAF1C, helical bundle domain	Interproscan
IPR038801 all species →	Family	TATA box-binding protein-associated factor RNA polymerase I subunit C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15319 all species →	TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001164 all species →	Molecular Function	RNA polymerase I core promoter sequence-specific DNA binding	Interproscan
GO:0001650 all species →	Cellular Component	fibrillar center	Interproscan
GO:0006360 all species →	Biological Process	transcription by RNA polymerase I	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15214	TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.