Gene detail

Detailed information of KAK2571991.1 in Acropora cervicornis

Genomic Location: JARQWQ010000005.1:3628789...3648522
NR annotation: XP_044183945.1, RNA polymerase I-specific transcription initiation factor RRN3-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

KAK2571991.1

ATGGAACTGACAATCTCAGAGTGGTGCTCAAAAACATGCATCATATCGAATCCAATCTATCATCTGTTTGGCATTGTGATGCATAGTGGTATGACATCCTGCAGTGGACACTATCAGGCATACGTAATGGTCCCCACACCCAATGACGCAGATTTCAATAACAGTAATGGTCATACAAGTCACCAGGACAACTATCAGCAGAGAAATGAGAGCAATGTAAACTCAGTTGGAGAGTCATCTCAAGAGAATGAAAAACAGCCACTAGCGAATACAGCAACATCTGTGAGCAGCAACACATTTTGCAAGGATGATGGAAACTCATCAGAAACACCCGAGGTATCTACTAATGCAGACGAAAGCGACATTCCATCTTTACAAAACTCAGCAGAGAAAGCTAAAACATCATGCATGTCTGGAATCAGTCGATACTTTCAAAGAACAAGGAAGTACTCCAAACTGGAAAACAATGAAGGAGCTGAAGACAGCTTTCAAGCAAGTGATTTAACAGAGAGCAAAAGACACAGATGCCACAGTACACCCTGCTTTAAAGGAATCAGTAAGTCACTGAATAAAATCCAGAGTTTTCAACATAGAGGTTTGACAGTGACCAGAAATGCTGTACGGCAGCTGAACTTTCAGGATAGTAAGAGACAAGGAAACAGTGAAACTAACCACCTTGCTGATGTGAAAAACAATAATAATTTAAGATTATCGCACACTTCTCTACCAGAATCCCATTACCAATGGGTTCACTTTGATGATGCTGAAGTCACAATACTTCAAGAATCTGATGTCACAGCATTGCTGTCCTCATCAGAGTCGTCTTTCACTTCTCCATACTTGCTTTTTTACAAATTAGAGGGCGTCCCTCAAAAAATTTACCACATCCAGCCACAAAGAGAGTGTCACCTGGAAAGATTCGCAAGAATGTCCGTTGAAAAGAGTTTGACCGAGTGTTCGATTTCAGAGGTCGAGCGTGCCAAAAGCGGTGTCGTGGTTCTCGCATCTTTGATCACAACTGCGCTGGATGATGCTAAATTGGGAAATGTCACGGATTATGAAAAGCTGGTTCAAAAGCTCTCTGATCCTGAAATTAAAAACACCAGATGGGCAGTTTGCAGCAATGAAACGGTGGAAGATTTTCTTGAATTTCTGACTAGTTTGGTGTCTGCTCAAACATATTACCTTAGAGCTTGCCTTCGCATGATTGTGAAACTCTTCCTCCCAGACAATTCTAAGGACCCTGAACAAGTTGATTCTGAAGAATTGGAAAGGAAATTTTCTAATGCACACGAGGCCCTCCATGCTGTTGTGGAGGTAGTCCCTGCAACTTCACAATTTTTAATTCCAGTACTATCTGAGAATTTTCCATACATGAAAAAAGACACAATATTCCAGGCCAGTTATGTTAAAAATTTACTAGAAGTGTCCAAATACTTGCCCATTCTCAGGGCTGGGATCCTAGAATTGGTCATTGACAATCTCATCAAGATCGATGTTGAAATCCCCAAGCATGAACTTCAAACTTTTGAAGCCATTTTGGAAGATGAGGATGAAGAGAATCATACTCAGTTTGAATTAGACATGGATTCCAGCCAACCAACTGTTACAGAAGATAACCGCATGGGAAATGAAATGGCAGACAAGTTGGATATCCTCATGGAAAGTCTTTTCCATTATCTTCATGATGTCACTCATGTAAATGGGGAACACAGTCTAGATGCTGGAACTGAATTATTTAAAGAGCTTCTTGTGGTTTTTGAGAATGTTATCCTGCCAACACATGCTTCTTGCCATGTTCAATTTGTCATGTTTGTATTGTGCAGCTTTGATCAGATTTTTGCAAATTCTCTCCTTGATGTTTGTTGTGAGAAGATTGAAAAACCCAACACTCCTGCCATTCTGCGTCAAGGCTGTGCAGCTTACATCGCAAGCTTTATTGCCCGAGCCAAATATATTCCTATCAGCTATATTGACGAGCATGATGCCAGCAGTCTTGGACCTGATGCAAACAAATACGGCCCTTTTTACTCTGTTTGTCAGGCACTGTTTTATATCTTCGTCTTTCGACACAAGCAGCTGCTTGAGTTGGAAGCAGGATTGAAGTACATAAGAAAACTGAACCTGCAAAGAATCGTAACCTGCCGTATGAACCCACTAAAGGTTTGTTTGCCCACCATTGTGAAAACGTTTGCTCACATAACAAGACAACATGAAATTGTTTTCTGTTACACCATCATTGAGCGGAACAACAGAATGCTTCTTCCAGTGGCAACAAAAACCACAAATCACACCTTGATGAACCTGTCCTTCATAAACCAGCTGGATTCATACTTCCCTTTTGATCCTTATCTTTTGAAAAGATCCGGCAAGTTTATCACACCAATCTACCAGGAATGGGAAGGACTTGAACATTACATGGATGAAGACCATGAAGAAAAGAAGCTTTCAGATGTAGAGGACGAAGAAGAGGAATACTTTCAATGCAGCCGAAGTCCAGATGTTGCTGTACCAGAATTTACCCCAGAAGAAACATCTATGTGCATCTCACCAGGATTTGATCCTTCTTCTGTACTCTCGTACAGCCACGGATAA

Transcript

Protein

Uniprot

Uniprot term	Description
B2RS91	RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus OX=10090 GN=Rrn3 PE=1 SV=1
Q9NYV6	RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens OX=9606 GN=RRN3 PE=1 SV=1
Q5R4N9	RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii OX=9601 GN=RRN3 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05327	RRN3	RNA polymerase I specific transcription initiation factor RRN3	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007991	Family	RNA polymerase I specific transcription initiation factor RRN3	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12790	TRANSCRIPTION INITIATION FACTOR IA RRN3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001042	Molecular Function	RNA polymerase I core binding	Interproscan
GO:0001181	Molecular Function	RNA polymerase I general transcription initiation factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006361	Biological Process	transcription initiation at RNA polymerase I promoter	Interproscan
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15216	RRN3, TIFIA; RNA polymerase I-specific transcription initiation factor RRN3	-	Transcription machinery	ko03021	deepkoala