Gene detail

Detailed information of KAL9950261.1 in Oculina patagonica

Genomic Location: chr14:803970...813916
NR annotation: CAH3116854.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

ACROYT_G042736

ATGAGCAAGCATCATAAAAGCGGCATTGTAGTGAATGGTGAAGACCGTAAAAGCTCACCGACAGAACCATGTAGTTCTTTGGGCACTTCAAAAACATTTCAACCTTCAGGCGATAATCTTAAGGAATTAAATTTATCATGGAAAAACAAACTACAGACTGGTAAAAGTAAGGCGTCATCATCTTCATCATCAGGATCAAAGAAACGTAATGCATGGATTGCTTCATCTTTTGGTGACTTTGATGAAGGAAATGCAAAGAAAACAAAACAAGTGAACATTGACCATTCTTTTAAAACAGGTGCTCGCCAGTCTGTCCCACAGAAACTAAAAAAAGATGAGGATCTGTGGCTTGACAAGTATAAACCAAAATCAGAGTCTGAACTTGCTGTTCACAAGAAAAAAGTGGCTGAAGTCCGTAACTGGCTTTTGGATCATTTGTGTAAACAGCTGACATCTGGTGCTATCTTGCTCCTCACTGGTTCAGCTGGTGCTGGAAAGACTGCAACAGTTCATGTGTTGGCAAATGAGCTGGGATTTGAGGTGCAAGAATGGATCAACCCTCTGAGTGATACCGAAGTGGAAGGTGCGTATTCTAACTGGAACAACAGCAGCCAATCACAAGTGAGACAATTTCAAGACTTTATCCTACGTGTCAGCAAGTACCCTACGCTGTCCATATTCAATGAGAAAGGCAATGATGCTGCCAAGAAAGTTATTTTAGTAGAGGATCTTCCCAATATATTTTTCAGGGAAGCAACAAAACTTCATGAGGTTTTGAGCACATACCAACAGAAAGGGCGAGTTCCTGTCGTGTTCATTATTTCAGATAGCCATCACGGAGACTCTAATGTCCATAAATTACTTCCTAAAGATGTTCAGCATAAACTGCACATTCATAATATCAGCTTCAATCCTGTTGCACACACCAGCTTGGTAAAAGCTATGAACAGAATAACATCACTGGAAGCCCAACAGAGTAAATCAACATTTATGATTCCAAGTAAGGAAACAGTTGAGCTTTTGGCTCAGAACAGTGGAGGAGATATTCGAACTGCCATTAATGGACTTCAGTTTTCTTGCTTAAAAGATAAGTCATTCACTTCTGGTAAGAGGTTTAATCTGGCAAGGAAAGATGAAAGCAAACCAAAGAGGTCAAAATCAAGATCAACGAAAGGTGGAAAACAGAGTAAATCAGTGTTTGACAGTGCAGAAACTTCACAATCAAGTCAGACATCCCAGTGTCTAGTGTACAAGAAAGAGACAGATGTAAACATGGTGTCAGAGGCAGTAACAGCCATCGGTGGACGAGACACAGCTTTGTTTCTCTTCAGAGCCTTGGGAAAAATCTTGTACTGTAAAAGAGATCCAACATTATCAGATGTAGACCTGCTACCACCTCACTTGTCACATTATGCCAGAAACCAGTTGTTGTTCTCTCCTGAGGAGGTATTAGAGAGGACTCATCTTTCCAGTGAACTTTTTAATTTATATCTTCATCAAAATTATCTGGAGTTTTTTGGTGATATTGATGATGTGGTGGACATCAGCGAACACTTCAGTGATGCAGACTACATGACTAAAGAGTGGATGCACCAGTCTTCTATGAGGGAGTACAGCTCATGCTTGGCTGCAAGGGGGTTGATATTTAACGGCAGGCCAGGGGGGAGCTTGTCAAATTCCAGTGGAGTGGGGAGAGGATGGAGACCACTTCATAAGCCACAGTGGTTTAATGTCAACAGAAAGTTGCAAGATGGTGCCAGTACTGCAAGAGATCTGTTCAGAGGTCACCACTGGCCATCAATAGTACTACAAACAGAGATTCTTCCATATTTGGCAATTACCGATGTACCCCTGAGAACACCAGGACAAATCTCCTTTCTTCAAGTGATTGGCAATTTCCATAAGTCAAAGTCTCCTTTCAGAGGAGCTCCAGATACTCTGGATGAAAAAGACTGTGGAACAGGAAGTGATGATGATGATGACGACACTCTTACTAGTTCACAACCTAGAGGGACCATGACCGAAGGAACCACAAAATGTGTGGCTGAGGATTGTGATTCACAAGTGACCTCTGATGTGCCAGCTGAGGATATTGATGATATTATAGAAGACTTTGATGATGACGACTGA

Transcript

rna-ACROYT_G042736.t0

ATCAgaacattcaaaatggcggttGACAGTCTTGGTAGCGTTTGAAGCTGGTTTCAAGCAAAGGAACATTCTTTTGTTTTACGGTTGCTTGCAATGAGCAAGCATCATAAAAGCGGCATTGTAGTGAATGGTGAAGACCGTAAAAGCTCACCGACAGAACCATGTAGTTCTTTGGGcacTTCAAAAACATTTCAACCTTCAGGCGATAATCTTAAGGAATTAAATTTATCATGGAAAAACAAACTACAGACTGGTAAAAGTAAGGcgtcatcatcttcatcatcaggatcaaagAAACGTAATGCATGGATTGCTTCATCTTTTGGTGACTTTGATGAAGgaaatgcaaagaaaacaaaacaagtgaaCATTGACCATTCTTTTAAAACAGGTGCTCGCCAGTCTGTCCCACAGAAACTAAAAAAAGATGAGGATCTGTGGCTTGACAAGTATAAACCAAAATCAGAGTCTGAACTTGCTGTTCACAAGAAAAAAGTGGCTGAAGTCCGTAACTGGCTTTTGGATCATTTGTGTAAACAGCTGACATCTGGTGCTATCTTGCTCCTCACTGGTTCAGCTGGTGCTGGAAAGACTGCAACAGTTCATGTGTTGGCAAATGAGCTGGGATTTGAGGTGCAAGAATGGATCAACCCTCTGAGTGATACCGAAGTGGAAGGTGCGTATTCTAACTGGAACAACAGCAGCCAATCACAAGTGAGACAATTTCAAGACTTTATCCTACGTGTCAGCAAGTACCCTACGCTGTCCATATTCAATGAGAAAGGCAATGATGCTGCCAAGAAAGTTATTTTAGTAGAGgatctTCCCAATATATTTTTCAGGGAAGCAACAAAACTTCATGAGGTTTTGAGCACATACCAACAGAAAGGGCGAGTTCCTGTCGTGTTCATTATTTCAGATAGCCATCACGGAGACTCTAATGTCCATAAATTACTTCCTAAAGATGTTCAGCATAAACTGCACATTCATAATATCAGCTTCAATCCTGTTGCACACACCAGCTTGGTAAAAGCTATGAACAGAATAACATCACTGGAAGCCCAACAGAGTAAATCAACATTTATGATTCCAAGTAAGGAAACAGTTGAGCTTTTGGCTCAGAACAGTGGAGGAGATATTCGAACTGCCATTAATGGACTTCAGTTTTCTTGCTTAAAAgATAAGTCATTCACTTCTGGTAAGAGGTTTAATCTGGCAAGGAAAGATGAAAGCAAACCAAAGAGGTCAAAATCAAGATCAACGAAAGGTGGAAAACAGAGTAAATCAGTGTTTGACAGTGCAGAAACTTCACAATCAAGTCAGACATCCCAGTGTCTAGTGTACAAGAAAGAGACAGATGTAAACATGGTGTCAGAGGCAGTAACAGCCATCGGTGGACGAGACACAGCTTTGTTTCTCTTCAGAGCCTTGGGAAAAATCTTGTACTGTAAAAGAGATCCAACATTATCAGATGTAGACCTGCTACCACCTCACTTGTCACATTATGCCAGAAACCAGTTGTTGTTCTCTCCTGAGGAGGTATTAGAGAGGACTCATCTTTCCAgtgaactttttaatttatatctTCATCAAAATTATCTGGAGTTTTTTGGTGATATTGATGATGTGGTGGACATCAGCGAACACTTCAGTGATGCAGACTACATGACTAAAGAGTGGATGCACCAGTCTTCTATGAGGGAGTACAGCTCATGCTTGGCTGCAAGGGGGTTGATATTTAACGGCAGGCCAGGGGGGAGCTTGTCAAATTCCAGTGGAGTGGGGAGAGGATGGAGACCACTTCATAAGCCACAGTGGTTTAATGTCAACAGAAAGTTGCAAGATGGTGCCAGTACTGCAAGAGATCTGTTCAGAGGTCACCACTGGCCATCAATAGTACTACAAACAGAGATTCTTCCATATTTGGCAATTACCGATGTACCCCTGAGAACACCAGgaCAAATCTCCTTTCTTCAAGTGATTGGCAATTTCCATAAGTCAAAGTCTCCTTTCAGagGAGCTCCAGATACTCTGGATGAAAAAGACTGTGGAACAggaagtgatgatgatgatgacgacacTCTTACTAGTTCACAACCTAGAGGGACCATGACCGAAGGAACCACAAAATGTGTGGCTGAGGATTGTGATTCACAAGTGACCTCTGATGTGCCAGCTGAGGATATTGATGATATTATAGAAGACTTTGATGATGACGACTGagtgatgtaaaaaaaaaaa

Protein

Uniprot

Uniprot term	Description
O75943	Cell cycle checkpoint protein RAD17 OS=Homo sapiens OX=9606 GN=RAD17 PE=1 SV=2
Q5R652	Cell cycle checkpoint protein RAD17 OS=Pongo abelii OX=9601 GN=RAD17 PE=2 SV=1
Q9XT62	Cell cycle checkpoint protein RAD17 OS=Chlorocebus aethiops OX=9534 GN=RAD17 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03215	Rad17	Rad17 P-loop domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004582	Family	Checkpoint protein Rad17/Rad24	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12172	CELL CYCLE CHECKPOINT PROTEIN RAD17	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000077	Biological Process	DNA damage checkpoint signaling	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0003689	Molecular Function	DNA clamp loader activity	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0033314	Biological Process	mitotic DNA replication checkpoint signaling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06662	HRAD17, RAD24; cell cycle checkpoint protein	-	DNA repair and recombination proteins	ko03400	deepkoala