Gene detail

Detailed information of KAL9952165.1 in Oculina patagonica

Genomic Location: chr13:2129399...2135765
NR annotation: XP_020618222.1, RNA-binding protein Nova-1-like isoform X1 [Orbicella faveolata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q2PFW9	RNA-binding protein Nova-1 OS=Macaca fascicularis OX=9541 GN=NOVA1 PE=2 SV=1
Q80WA4	RNA-binding protein Nova-1 (Fragment) OS=Rattus norvegicus OX=10116 GN=Nova1 PE=2 SV=1
A0A1W2P872	RNA-binding protein Nova-2 OS=Mus musculus OX=10090 GN=Nova2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013	KH_1	KH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR047274	Domain	RNA-binding protein Nova-1/2, type I K Homology domain 3	Interproscan
IPR004087	Domain	K Homology domain	Interproscan
IPR004088	Domain	K Homology domain, type 1	Interproscan
IPR047276	Domain	RNA-binding protein Nova-1/2, type I K Homology domain 2	Interproscan
IPR047275	Domain	RNA-binding protein Nova-1/2, type I K Homology domain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000381	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14944	NOVA; RNA-binding protein Nova	-	Spliceosome	ko03041	deepkoala