Gene detail

Detailed information of KAL9953144.1 in Oculina patagonica

Genomic Location: chr13:14495046...14502291
NR annotation: XP_015758434.1, PREDICTED: uncharacterized protein LOC107337721 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

ACROYT_G040510

ATGGCTGACAAGAGAGCTCGTCGCAGACTAAGCGATCTTGAAGACCCAAGCTTGTTTGCTGCGGCGGATTGCCTTGGTAGTGTGACACAGTTAGCAAAGTTAACTGTGTTAGAATTGCTTAGAACACCTTGCCTTTCTGAAGATCAGATTTCTGTATTTCTAATCTCCAAGTTCGGCCTTCATAAGTTCGACATCCTCAGGCAAGCGGTGTCAACGGTTCCTCTTTTATTCTCCACGAATCGGTTGGAGATAATAGAGGAACTGTTCCCTGCTCTGAAGGATGTCGAAGATCTGCCAAACGCTATTTTGTTGGCAGATCATCTTTCCCAATCATCCGGAAAGGCAGGGACCGCGGAGGGGGAGGGGCTGGATCAGCGTTGCTTTGGGCCTCCAACAAGCCGATGTCTTCAGTGTGGCGGAAATTTATCGCGCCACAATGATCCTAGCGACGTTGTGTTCTTTGGATTCAAAGGTTCCTTTGCAGGCAAAAAAATTACTTTGCGGTGCAATAAATGCCGTTTGAATTTCTCTTACTCTTGCTTTGGAAACAAGGAGAGTGGATACCAGTTTTACGACACGATCAGAGATACAGTCGAGGCAACTGACTCCACACTTGTAGATCGTGAACTTTTTGAATTGTACTGTTCTCTTGCAAATCACGGATGGCTCTCATTTGAAGCTTTTTCTGAGGGATATAGTGAGTGGATGAGGAGAAAAGAAGGCTGTTCACAAAGAGAACTGTCTGCAAAGTGTGTGGCCGACATGTTCTGGTGGGATTTTCCCATGTACAAGGATGCTGACAGAGAACAACTGATGGATGGCATTGAAGAGAGGAGGAGGGTTTCAACTTACATACATAATTGTACAGAGGACTGTAAAAAGAGAGGTTGTGGAAAACTTTGGGTGATTGATGGTAACTGGAAGTTGAGATTCCCCCACTGCATGTACAAGGTTAAAAATGCAATCCCGAGCTTGCCTATGGTCAATTATCCAGACATATGTGCAGCCACACCTGAAAGAGGGAAGGCCTTCTGCAAGACCCACTGTAGTAATCTGTCTGAGCAGGGAATCCCCACTGGCCTGAAAGAATTTCTTGAATACTGCTCAAAACAAGATGTGTTCCAGTCGGAGATGTGGCGTGAATTCTATTCGTCAATTCCTGATCATCTGCAGCCGTTGGCTAGCCGCGTCCAGGAAACCGTGCTGGTGTCCAAAGCAGATGGTACTATCCGCAGTTACTTGGCCGGTTTCAAACGATGGAAACATTGGGCTTTGTCCAATTGTTTTATCCACATGCCAGCCAACTCTTTCCATGTTGCGGTCTACCTTCAATGCCTTATCCTCGATGCAAATTCTCCATCGCCAGTTCTCAATGCAGTTTACAGTATCGACTGGGCTCAACAGTTGGCCGGTTTGCCGAAGGTCTCAGTACATCCCATGGTTGCTTCTTTGGTCAGCGCTTCCCAAAGGATCCTGGGGAAACCGAAATCGAAGAAGGAACCCGTCACTCCGGAAATGTTAAAGACGCTTGTTAATTCCAAGATTTCAGATAAGTGTCCTTCTTTATCGGATCTGAAAACAGTAGCTCTATGTCTTATAGGTTATGCTGGATTTTTTCGTTTCAGTGAGCTATGCGCCATAAGAGCTTGTGACATAAAGTTCTTTCCTACTTATGTGTCCATATTTCTAGAATCGTCCAAGACAGACCAATTCCGTGACGGAGCTTGGATTGCAATCGCGAGATCAGACCAGGAAACTTGTCCTGTGAAGGCCTTAGAGCAATACATTGCTGCCGCAAAAATTGATCTTTGTGAGGATTTACCCTTGTTCAGAGCCCTCTCGTCTCCTCGGTCCACTTCGACAGTTCGGCGCCAGGGCTTAAGCTACACTAGAGCCAGGGAGATCGTTAAGGACGCTTTCAAGGACATCACTGACGTTTCCTGCATAAGTCTTCACAGTCTTAGGGCCGGAGGAGCCACTGCTGCCGCCAATGCAGGGATTGTTGATAGACTCTTTAAGAGACACGGTCGTTGGCAAAGTGAAAATGCTAAAGATGGATACGTTAAAGATAATTTTGAATCTTTGCTCTCTGTTTCGAAATCATTAGGAATTTAA

Transcript

rna-ACROYT_G040510.t0

ATGGCTGACAAGAGAGCTCGTCGCAGACTAAGCGATCTTGAAGACCCAAGCTTGTTTGCTGCGGCGGATTGCCTTGGTAGTGTGACACAGTTAGCAAAGTTAACTGTGTTAGAATTGCTTAGAACACCTTGCCTTTCTGAAGATCAGATTTCTGTATTTCTAATCTCCAAGTTCGGCCTTCATAAGTTCGACATCCTCAGGCAAGCGGTGTCAACGGTTCCTCTTTTATTCTCCACGAATCGGTTGGAGATAATAGAGGAACTGTTCCCTGCTCTGAAGGATGTCGAAGATCTGCCAAACGCTATTTTGTTGGCAGATCATCTTTCCCAATCATCCGGAAAGgcagggaccgcggagggggaggggctgGATCAGCGTTGCTTTGGGCCTCCAACAAGCCGATGTCTTCAGTGTGGCGGAAATTTATCGCGCCACAATGATCCTAGCGACGTTGTGTTCTTTGGATTCAAAGGTTCCTTTGCAGGCAAAAAAATTACTTTGCGGTGCAATAAATGCCGTTTGAATTTCTCTTACTCTTGCTTTGGAAACAAGGAGAGTGGATACCAGTTTTACGACACGATCAGAGATACAGTCGAGGCAACTGACTCCACACTTGTAGATCGTGAACTTTTTGAATTGTACTGTTCTCTTGCAAATCACGGATGGCTCTCATTTGAAGCTTTTTCTGAGGGATATAGTGAGTGGATGAGGAGAAAAGAAGGCTGTTCACAAAGAGAACTGTCTGCAAAGTGTGTGGCCGACATGTTCTGGTGGGATTTTCCCATGTACAAGGATGCTGACAGAGAACAACTGATGGATGGCATTGAAGAGAGGAGGAGGGTTTCAACTTACATACATAATTGTACAGAGGACTGTAAAAAGAGAGGTTGTGGAAAACTTTGGGTGATTGATGGTAACTGGAAGTTGAGATTCCCCCACTGCATGTACAAGGTTAAAAATGCAATCCCGAGCTTGCCTATGGTCAATTATCCAGACATATGTGCAGCCACACCTGAAAGAGGGAAGGCCTTCTGCAAGACCCACTGTAGTAATCTGTCTGAGCAGGGAATCCCCACTGGCCTGAAAGAATTTCTTGAATACTGCTCAAAACAAGatgtGTTCCAGTCGGAGATGTGGCGTGAATTCTATTCGTCAATTCCTGATCATCTGCAGCCGTTGGCTAGCCGCGTCCAGGAAACCGTGCTGGTGTCCAAAGCAGATGGTACTATCCGCAGTTACTTGGCCGGTTTCAAACGATGGAAACATTGGGCTTTGTCCAATTGTTTTATCCACATGCCAGCCAACTCTTTCCATGTTGCGGTCTACCTTCAATGCCTTATCCTCGATGCAAATTCTCCATCGCCAGTTCTCAATGCAGTTTACAGTATCGACTGGGCTCAACAGTTGGCCGGTTTGCCGAAGGTCTCAGTACATCCCATGGTTGCTTCTTTGGTCAGCGCTTCCCAAAGGATCCTGGGGAAACCGAAATCGAAGAAGGAACCCGTCACTCCGGAAATGTTAAAGACGCTTGTTAATTCCAAGATTTCAGATAAGTGTCCTTCTTTATCGGATCTGAAAACAGTAGCTCTATGTCTTATAGGTTATGCTGGATTTTTTCGTTTCAGTGAGCTATGCGCCATAAGAGCTTGTGACATAAAGTTCTTTCCTACTTATGTGTCCATATTTCTAGAATCGTCCAAGACAGACCAATTCCGTGACGGAGCTTGGATTGCAATCGCGAGATCAGACCAGGAAACTTGTCCTGTGAAGGCCTTAGAGCAATACATTGCTGCCGCAAAAATTGATCTTTGTGAGGATTTACCCTTGTTCAGAGCCCTCTCGTCTCCTCGGTCCACTTCGACAGTTCGGCGCCAGGGCTTAAGCTACACTAGAGCCAGGGAGATCGTTAAGGACGCTTTCAAGGACATCACTGACGTTTCCTGCATAAGTCTTCACAGTCTTAGGGCCGGAGGAGCCACTGCTGCCGCCAATGCAGGGATTGTTGATAGACTCTTTAAGAGACACGGTCGTTGGCAAAGTGAAAATGCTAAAGATGGATACGTTAAAGATAATTTTGAATCTTTGCTCTCTGTTTCGAAATCATTAGGAATTTAATAAGACCGAGCCCAGCAGGTCGGAGAGTACTATCCATAGGGCTGGGGTTTTTCCTCTACGTTTCCGCTACAAGCGCGGTGAGGTTTTTTCATCCTATGGATGCTCGTTGGTACTTTCCTAGTTTGTTTTTCTAGGTTCTTTATGTCAATCAGgttttttcgttattttcaaGATATTTGACTCCTTGTACGTCtgcagtcaataataaaccgtgCGGCCTCCAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18718	CxC5	CxC5 like cysteine cluster associated with KDZ transposases	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010998	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR052925	Family	Phage Integrase-like Recombinase	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR002104	Domain	Integrase, catalytic domain	Interproscan
IPR041539	Domain	CxC5 like cysteine cluster associated with KDZ	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34605	PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan