Gene detail

Detailed information of KAL9953822.1 in Oculina patagonica

Genomic Location: chr13:23440218...23444619
NR annotation: XP_022809350.1, uncharacterized skeletal organic matrix protein 5-like isoform X1 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-ACROYT_G041289.t1

attttggaaaaattgtgAATAGTACATCCCTGATGCAGAATCTATCGGTACCTTTAATCGAAGGTCAGCTTTTAAACGTGTATCGGAAATAACAAGGGTTATGTaatgtgttaaaaaaaatctgcaTTCACTTAGAAAAGAGTGAAAGGTACGCGACGAGCTTATTTGATTTAATTTGCCTCTATTCTCTCAATGTGAAAATAACTTGGGAAAACCTTATAAAACATTCATGCTAGACAATGTTCATGCTGGGGTGTTTGGAATTTACGCTGCATATGtatttttcaaaaacagaaCTTCGATAAATCTATTCAAACAAATCTCAATCATGGATGCATGGGTTTGTTCTTATAACGTTTAGTGAACGCATCcacttaaattttaatattttcgaacataccCTGCTTGCGATGTGTCTGGCAATCTTTATCATGATTCAAAAAAAGCTTACCTATTTGGTCTTCAAAAATCATTTAATTTCACGACCTTGACGTTCTTAAAGTTAAAGAGGTTATTGTGAAAACCAATTCAATAGAAAGTGCTTACTGAGATGTTCAAGGCCAGAATGTTCTACAGTTATGTTTTGACGTCATGAAAGATTCGTCGGTTTTCTTTCTGGCGATCACAAAAACGAGCTTTTTTCTTAATATTTCTCCCGTTATCATTttccgttattttttttttttttattttgagagcTTTTGTACAATCTTAAAACGTTTTGatggattattttttttttttttatcgctcCATTTATAACCcaaccgaaatttccggaattttttgTTAATGGTTAACAGCGCTAGAAGGCAAGCAAATTAAGGACATTAAATCTTGTCGATGAAAAACTTATTTGAAGAAACTAGTTAAAAATTCATGCTATGCAAAGTCCAAGCTGGGAAGTCAGTGGCAGTTCAACACAATTTTGGTAATAAGTCAAGATACACATATCAAAATCATGAATGAGTTCGTTCTGCTATCATTTAgcagttttgtattttttacttgTCATATTCTGGATGAAGGCGTTTGCGACACGGTTAGCAGTTTTCACCGCGACAAAAGACTGACTTATGCGGTCTTCAAAGATCATTTATTTCACGATCTTGACGTTCCTATTGTAGAAACGGCCATTGTTGAAACCGAAAGAAATTGCTTACTGAGATGTGTAAAACATTTTCAATGTTTCTCCACCAACATTGCGGCATTTTCTTTACCTAACGGAACCGTACTGTGCATGCTACTATCTACAGACAAATACAATGCACCAGGAAATTTCAGAGCCAATTACTCTTTCCATCACTACAGCATTGTGAGTCCTTGTGAGAGTTTTCCTTGCCAAAATGGAGGAACCTGCCGAGCGCTTTACGAAACGGATGACTACAATTGCACTTGTGCAGGATCCTGGATTGGCAAAAACTGTGAACTTGAACCTGGGAATAGCTGCAAGGAAGTATATGACAGAAACTTAGCCGAAGGTAACAAAGCCTACCTTTTAAAGCTGGGAACAGATGTACTTCCTGTTTACTGTCATATGACTGATGACCTTGGAGCATGCGGAAGTGGTGGATGGACGCTGGTTATGAAGATCGACGGTAACAAGAACACCTTCCACTACGATTCTAACCTTTGGAGCGACAACAACGGATATAACCTTTCAGGGGGAAAGAGTGGGTTTGACTCACAAGAGACCAAATTACCGAGCTACTGGAACACCTCTttctccaagatttgtcttggaaTGAAGATTGGCCAAcagatcaacttcattgtcatcaacaagcaggccaactctctgcactcactgatcgctgatgggcaataccgcgccacctcactgggtcgtaacacgtggaagtTCCTGCTTGATTCTCAAGCATCCTTGCAGCTCAATTGTACCAAGGAAGGGTTCAATGTTGTGGGTTCTTTGAGTTACATGTCTAAAGCAAGAATTGGTATCCTGGGTGACGATTATAATGACTGCTACGCCTGTGATTCCAGAATAgggtttggtacaggaggaGAGCAtgatgactccaacacgtgtggaaacgatGCTAAGTGGAACCCAGATAATGGCGACAAAAGCATCAAAGCTATGGGATACATCTTTGTTCTGTGATAAGGAACTTGACTTATTTATCAATTATCAAGCACTTAAAAGGCACGGTAGACATATttgtagttttctttatttatctggcttctGTAACAATCAAGCAACTGTTATCATGAATAAAGCAGCATTAAAT

Protein

Uniprot

Uniprot term	Description
B8VIU6	Uncharacterized skeletal organic matrix protein 5 OS=Acropora millepora OX=45264 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16146	INTELECTIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0070492	Molecular Function	oligosaccharide binding	Interproscan