Gene detail

Detailed information of KAL9954666.1 in Oculina patagonica

Genomic Location: chr13:33856234...33861230
NR annotation: DAC81288.1, TPA_asm: integrase [Corynactis coral adintovirus]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-ACROYT_G042231.t0

ATGCAACAGTTCAGTAGATGGAACAAGGGATTCAGATATCTTCTCATGGTACTGGATGTTtttagtaaatatggttggatagtgccACTTAAggacaaaaaaggtgaaactgtaactcaagcattcataacaatattcaaagaggggcgtaaaccacaatatctttggactgataaagggaaagagtattacaataaaaatataaaggagcttttggaaaagaatggtataacactatactcaactgaaaatgaagagaaaagtAGCGTATGCGAACGATGGaataggacaattaaaacccAAATGTGGAAACAATTCACTGTTCAAGGTAATACGCAGTATCTTGATATGTTACCTAAATTAGTGAAAGAGTATAACAACACTAAACATTCAAGCATAAAGATGACACCAACAGAAGCAAGCAAAAAGAAGAATGAAGGGATTGTTTACTTTAATCTGTATGGTAATATGGAGCAAGTATCATCTaagccaaaatttaaaataggtgaCAAGATtcgaatatctaagtataaacgtAAAGTGTTTGACAAAGGATATACACCTAATTGGAGTgaggaaatatttaaaataaataagatacaatacactaatcctattACTTATAAACTGAAGGATTTAAATAATGAAGAGATAGGCGGAAGTTTCTATGagcctgaattattaaaagctgAACAAGAAGTATTTCGTATTAATAAAGTAATTCGGCGGAACTATAAGAAGAACCTAGCTTTGATTCCAAATCACACGGGAGACGATTGCCCACTGATGATTATTTCCTGTCCTTATGTAAAAATGGGCTGTGAAACAAAGATTCAAAGAAAACAAGTGGAGTCACATCTTCAATCTGCCATGAGGTTTCATCTTGACTTAGCTTGCGTAAAGTTAAATGACGCAGAAGAAAAACTCGAATGTCTCCAGAGACGGTTAGAAGAGAAAATAAGCAATAATCAAGGGAATACGACTGAAGAGAAAATAGTGATGgtaaaaaatgtgtttgtttggAAGATAAACGATTTTAaggaaattttaagaaaagcaAGGAGCGAAGAAAACATAAGAATAGGAAGTGCCCCATTCTACACAGAAAGTTATGGCTACAAAATGAAAGTAGAAATTTATCCTAACGGCCAGAGTTCTGGCAAGAATACTCACCTGTCGGTGTTCATTTATGTAATGAAAGGTGAATATGACGCTATATTACCCTGGCCTTTCAAGAAGAAAGTGAAGATTACATTGATTGATCAACAGGAAGATTTAGTCGAACGGCAAAACGATACTGGGCAGTTATTTCTAGGAAACTACCCCCAATGCTCTACAAGGCCTATGAAAGAAGCGAACATAAGCACAGGGTTTCCTGCGTTTATATCTCACAAGAAGCTTTATTCGAGGCGTTACCTTGTGGATGACACTGTGTTTCTTCAGGTTGAAGTCGGCCCTTCATCcagttgattttgattttgattttcagttttattgttaCATTCTACTATCGCACCCCTGTACGTGTTTTGGTcgaattcttaaaaaaaagaaaaaaacacctaaaaacgTGAAGAGCGCCAACTGCAGAGGTAGGGGGACGCGCAGGGAGGGTAGAGGGGGAAGGGCACTACACAATATGTTTTTTATTACAACTTCGACATAAATTGCCCGGTAATAAAACTGTTAAAGATGCATGCATGTTTGTTAAGTGACTCCACAATTAAGATATCGAAATTAATAAGTTAAGGAAGTTTACAAAACATCATTGGATATTTGTCATGTGCCGGGCTTTCAAAAATCGCAGTAATAAGTAGGTGTTTAGATTGCATGAATAATGTAGAATAACTCTGTATCTTCATTTAgcaattttgtaaaacaaagcaaTAGTTAAGTCAGTTActgatgaaaaacaaataatattttaaactaatcacagctttctaattttttcgCCCTTgttgtaaaaattatttctgtaacTATTCTGTAAATCAATATTCCGTCAAAGTAAGAGTTTGTATCTATGCAGTTTTGAACTTAGTAATAAATGAAAGATATAAATCTC

Protein

Uniprot

Uniprot term	Description
Q60803	TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2
Q13114	TNF receptor-associated factor 3 OS=Homo sapiens OX=9606 GN=TRAF3 PE=1 SV=2
P39428	TNF receptor-associated factor 1 OS=Mus musculus OX=10090 GN=Traf1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46585	INTEGRASE CORE DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan