Gene detail

Detailed information of KAL9956522.1 in Oculina patagonica

Genomic Location: chr12:19375812...19399203
NR annotation: XP_020627898.1, ATP-binding cassette sub-family A member 3-like isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ACROYT_G038006

ATGCCCCTCTTTTTTATAGTAATCCTAGTCCTTTTACGAGCATTTGTTGTCAAAGACGAGCGCAAACCAAATGTTACTTACTTTGCGTTTGATATAAATGGACTACCAGAAAATTTAATTGAAGATACTACAACCTGGAAATTGGCTTTTGCACCTAACACAAGTGATGTCAGACAGGTAATGGACATGGTTGCGCAACAACTTTCGCTCAAAAAAGTTGGATTTCGAACTGAAGATGAAATGGTGAGAGTTCTAGTTAACGAAGAACAAAATGAAGATAAACGTGCTAAGGAGTTGTTTCTTGGTGGAATTGCTTTCAATAAGAGTCTTGACAGCGGCGACATCATCTACAAAATTCGTCTGAGTTCAAAATCAAGGAAAAAGTCAAAACTGAGGAGACAGGGATTTGGTGCAGACCCATCAGCGACCTGGAATACTCAATTTACATTTCCAGTATTTGAGATTCCTGGACCCAGAACCAAGAATGCTACCTATGGCGGTCCTCCTTATTATTATGAAGAAGGATTCCTATCGCTCCAACACGCTGTGAATTTTGCTATCATCAAATACAAAGGGAACATCCAGGATCTTAACACAACGGTGTCTGTCAAGCGATTTCCCTATCCAGAATATATTCAAGACCCTTTCATACTGGCTATACAGCAAAGCCTTCCTCTACTCTTGATGTTATCTCTTATATTCACTGCCTTAAACATTGTTCGAGATATTGTCTATGAAAAGGAGAAGAAATTAAAGGAATCAATGAAGATGATGGGTCTAAATGGTTGGCTCCACTGGTCAGCATGGTTTGCAAAATACTTCATATTCCTTCTTATTACAATGGCGTTGGCTACGATTTTCTTCACAATAAAGTACAATGAGAATGGCCGTGTCCTAAACCAAAGCTCACCATCCGTCTTGTTTGTTTTCTTGATGCTCTATGCAATATCTTCCATCATGTTTTGCTTCTGTGTCAGCGTGTTCTTCTCCAAGGCGAACCTCGCCGCAGCTGCTGGGGGAATAATCTGGTTTTGTAATTACATTCCTTACTTTTTTGTCTCACAGAGCTATGACACAATGAGCTTAGGTGCCAAGGCAGCATCTTGCCTCCTTTCTAATGTCGCGATGTCGATGGGCGCTCAGTTGATAGGGAAATTTGAAGGAGCTGGTACAGGTTCTCAGTGGTCAAACCTTAATCAAGGGCCTTCCATTGATGATGATTTTACGCTTGGTCTTGTCTTTGTGATGCTTGTGGTAGATTCGTTACTTTATGGTATGATAGCTTGGTACATAGAGGCTGTCTTTCCTGGTGATTACGGAGTTCCGCAGCCTTGGTACTTCCCTGTTTTGCCCAGTTATTGGTGTGGAAAGAGTAAAGAGGTAGAGATAAGTGATTTTCATAGTACAGCAAACGGCACCACATCTGAAATGTCTGCACCTGAATTTTTAGAAAAAGAACCTGTGGGTTTGGAACTGGGGATTGAAATAAAACATCTCAAGAAAGTTTTCAACTCTGAAAAAGGTAAAAAGATAGCTGTTAATGGTGTGTCACTGAATATGTATGAAGGTCAGATTACGGCACTACTGGGACACAATGGGGCTGGGAAAACAACACTGATGTCCATGCTAACTGGGCTCTTTCCTGCAACATCTGGTTCAGCACTTGTCAATAGCTGCTCAATCAGTGATAATATCACTGGGGTACGCAGCAGTCTTGGTCTTTGCCCGCAGCACGATGTGTTATTTGACCGTCTGACTGTTGAAGAGCACCTGTGGTTCTTTGCCAAGTTAAAGAAATGCCCATCCTGGCGAGTGAAAGAAGAGATCGACAGAATGATTGATTGTATTGGACTGACTGACAAGCGACACACGCAGGCCCGTAATCTGTCTGGGGGCATGAAAAGAAAACTTTCTGTTGGAATAGCGCTCATTGCTGACTCCAAGGTTGTGATGCTAGACGAGCCAACATCCGGCATGGACCCGTCAGCTCGCAGGTTCACCTGGGATTTGCTGCAGCAACAGAAGGAAGGAAGAACCATCTTGCTCACCACTCACTACATGGACGAGGCAGACATACTAGGCGACAGGATCGCTATCATGGCTGAGGGGAACATCAAATGCTGTGGCTCTTCCCTTTTCCTTAAGAACAAATATGGGGTGGGCTACCACATGGCCATAGTAAAGGAGCCTAATTGTGATGTTTCCAGGGTGACTGATGTCGTCAATGGTCACGTGCCTACAGCAAAACTGGAGAGCAACATTGGTGCTGAACTGTCATTTATTCTGCCAAGTGAAGCAACAGGCAAGTTTGAGGAGCTCTTCATGGAACTGGAAACGCGCCGAAAGGATCTTGGGATTGCTAGTTATGGTGCTTCGGTTACAACTATGGAAGAAGTATTCCTCAAAGTTGGAGAAGAAATGGACAGCACCCTTAGCGATAAATTACAACAGAAAGACAAACAAGAAACGCCATCAGTTAACGGGATGGTCATGAACGGAGACGTCCCAGCGCCGAGCGAAAGATCTTCAGTGCTAGCACGCATGAGCGCCCTCGGATCATCTAACGGTGGTTATGGTACGTTTGGTGACTACAACAGCTACGCGCACTCTTCCGGTTTCCGTCTGCTTCGTCAGCGGTGGTACGCGATGTTTATGAAACGGTTGCTTCACTCCAAAAGACACAAGCTGGCGATTGTTTCACAACTTCTTCTACCTCTGATATACACGCTCATTGCACTTATCAACGCTAAGACCTTCCCCCAGCCCACCGACTCGCCACCGCTCACTCTGTCCACACACAACTTCTTGAACAACTTTGTACCCTGGTCAGCAGAAAGTTTCACTGAGACACTTCGTTTAGCTGAACGTTACAGAACTCAGTGGCATGGTGACAAGACACATCCTGTTCACGTGACTGGTGACATGCAGCAGTACTTGATGAGTAAAGCTCTAGACATGGGACTCGGCGACTTCAACAGAAAAGATTTGATCGCTGCCACCTTTGCGAAACGTAAAGGCAAAGTAAACGTTACGGCGTGGTTCAATAATCAAGCCTTCCATTCCATCGCCGTGTCCCTTGCGGCTGCAGACACTGCCATCTTGCGTTCTACTCTTGGAACAAACTTCTCACTGACGACCATAAACCACCCCCTGCCAAGAACAGCTCAAGAATCCATCAATGATTTACAACGTAACGGCCTTGGATTCATGATCTCGTTCAATGTGTTGTTTGGCATGGCCTTCCTGGCTTCAAGCTTTGTCGTGTTCCTGGTCCAGGAACGAACCAACAAAGCGAAACACGTGCAGTTTGTCAGCGGTGTAGATCCGTTTAGTTACTGGGATTCCGCCTACACATGGGACTTAATCAACTTTCTCCTCCCGACCCTCTCGATAATGATCCTTGTGGCCGCTTTTGACGTCCCTGCTTACACAGGTCCTCGTATTGGCTATCTGTTCCTGTTGATGATGCTATATGGCTGGGCCATTATTCCTCTCATGTATCTCTTCTCTTTTGTGTTTCGTACCGCTTCCACTGCCTTTGTGGTGCTGACTATATTCAACATTATCACAGGACTGGCCACGCTTCTGACCGTCTTTATTCTAAGTATTCCAGGTCTAGACCTCTTGGACGTTGCCGACGCCCTGAAATGGGCCTTTCTCGTTCTACCCAACTACTGCCTGGGCCAGGGAATCGGAGACATGTTCAACAACTACAATGCCTTGGACTACTTCAACAAAGCCGTGGACATGTGTGTTAATTCACCGTATCACCTCCCCAGGAAATCCTGTGAAGAAGAAGTCCGAAAACTAGTCGGCGATCAGCTAGTGTTTCAGGATAATTACCTAGCGTGGGATAACCCCGGTATCGGTCGATACCTGATATTCTTGGCTTGGGAAGGAATCTTTTTCTTTGCGCTCGTGCTGTTGATCGAGTATCGCGTGTTTAACGTGTGTACGCGTTTTTTCGCGCGGTTACGCTCATGCTCCACTGGAGTGTTCACAATGGAGGAGTCGAACTTGGCCGATGATGACGACGTTTTAGCGGAGAAGGAAAGAGTCATGACTTCTACGGATATCGATGATGTGCTTGTTATCAAGGAATTGACAAAGGTCTTCCCTGGACACGGCCGTCGTTCGCCATTGGTTGCGGTGGATCGTTTGAGCCTGGGTGTCCCCATGAGCGAATGTTTTGGTCTCCTTGGAATCAACGGCGCCGGCAAGACGACCGCGTTCCGCATGTTGACTGGTGACGAGACCATGTCAGGCGGCACAGCTGTTGTGGAAGGCTTTGACATCAGAAGCAACATGAACAGGGTTCGCCAGCGCATTGGTTATTGTCCACAGTTTGATGCTTTGATTGATCAGCTGACCGGAAGAGAGCTGCTCTACATGTATGCGCGACTACGAGGCGTACCGGAAACGATGATAGCTGATGTTGTAGAGGATCTCATTAACGCTCTGCTGCTTCAGGAGCACGCTGATAAGTTAACCAGTTCATACAGTGGTGGCAACAAACGAAAGCTCAGCACAGCCATATCACTTGTGGGGGACCCTCCGGTGGTGTTTCTGGACGAGCCCACGACTGGTATGGACCCAGTGGCGAGAAGATTATTATGGGATGCATTGTCACGTGTTCGGGCTGATGGACGATGTATCGTGATTACTTCACACAGCATGGAGGAGTGTGAAGCTCTTTGCACTCGACTGGCCATCATGGTAAACGGACGATTAAAATGCCTAGGAAGTCCGCAACATCTCAAAACCAAGTTTGGCGAGGGCTACACTCTTCTCGCAAGAGTCTCCCGTGATACACCGGATATCAGACCGCTGAAGCAATTTATAGAAGGCTCATTCCCTGGCAGCGTGTTGAAAGATGAGCATCAAGGCATGGTCCACTATCACATCCGCGACACCAGTGTAACGTGGGCTCAGCTGTTTGGGACAATCGAGAAGGTTAAAATGGACTACAACATTGAAGATTACTCTGTTAGCCAGACCACGCTAGAGCAAGTGTTCTTGAACTTCGCCCGAGGACAGAGAGCTGAGGACGAATGA

Transcript

rna-ACROYT_G038006.t0

AGCGCTTAAATTTAGTGTATAACGTAGTGTAATTCATTCACAGCTCAGGAGCTTTACATTCTGAGGTAAACTGATGGTTAACAGGCCTGGTCAATTTTCTTCTACGTCCAGATATTAACGTTCAGCTGTCAATTAACAGCAACATGGGAAAAGGAAGCCAATTTTTGCTGCTATTATGGAAAAACCTTGTCTTGCTAAAGAGGGCTCCAGTGCGAACATTCTTCCAAATTTCAATGCCCCTCTTTTTTATAGTAATCCTAGTCCTTTTACGAGCATTTGTTGTCAAAGACGAGCGCAAACCAAATGTTACTTACTTTGCGTTTGATATAAATGGACTACCAGAAAATTTAATTGAAGATACTACAACCTGGAAATTGGCTTTTGCACCTAACACAAGTGATGTCAGACAGGTAATGGACATGGTTGCGCAACAACTTTCGCTCAAAAAAGTTGGATTTCGAACTGAAGATGAAATGGTGAGAGTTCTAGTTAACGAAGAACAAAATGAAGATAAACGTGCTAAGGAGTTGTTTCTTGGTGGAATTGCTTTCAATAAGAGTCTTGACAGCGGCGACATCATCTACAAAATTCGTCTGAGTTCAAAATCAAGGAAAAAGTCAAAACTGAGGAGACAGGGATTTGGTGCAGACCCATCAGCGACCTGGAATACTCAATTTACATTTCCAGTATTTGAGATTCCTGGACCCAGAACCAAGAATGCTACCTATGGCGGTCCTCCTTATTATTATGAAGAAGGATTCCTATCGCTCCAACACGCTGTGAATTTTGCTATCATCAAATACAAAGGGAACATCCAGGATCTTAACACAACGGTGTCTGTCAAGCGATTTCCCTATCCAGAATATATTCAAGACCCTTTCATACTGGCTATACAGCAAAGCCTTCCTCTACTCTTGATGTTATCTCTTATATTCACTGCCTTAAACATTGTTCGAGATATTGTCTATGAAAAGGAGAAGAAATTAAAGGAATCAATGAAGATGATGGGTCTAAATGGTTGGCTCCACTGGTCAGCATGGTTTGCAAAATACTTCATATTCCTTCTTATTACAATGGCGTTGGCTACGATTTTCTTCACAATAAAGTACAATGAGAATGGCCGTGTCCTAAACCAAAGCTCAccatccgtcttgtttgttttcttgatgCTCTATGCAATATCTTCCATCATGTTTTGCTTCTGTGTCAGCGTGTTCTTCTCCAAGGCGAACCTCGCCGCAGCTGCTGGGGGAATAATCTGGTTTTGTAATTACATTCCTTACTTTTTTGTCTCACAGAGCTATGACACAATGAGCTTAGGTGCCAAGGCAGCATCTTGCCTCCTTTCTAATGTCGCGATGTCGATGGGCGCTCAGTTGATAGGGAAATTTGAAGGAGCTGGTACAGGTTCTCAGTGGTCAAACCTTAATCAAGGGCCTTCCATTGATGATGATTTTACGCTTGGTCTTGTCTTTGTGATGCTTGTGGTAGATTCGTTACTTTATGGTATGATAGCTTGGTACATAGAGGCTGTCTTTCCTGGTGATTACGGAGTTCCGCAGCCTTGGTACTTCCCTGTTTTGCCCAGTTATTGGTGTGGAAAGAGTAAAGAGGTAGAGATAAGTGATTTTCATAGTACAGCAAACGGCACCACATCTGAAATGTCTGCACCTGAATTTTTAGAAAAAGAACCTGTGGGTTTGGAACTGGGGATTGAAATAAAACATCTCAAGAAAGTTTTCAACTCTGAAAAAGGTAAAAAGATAGCTGTTAATGGTGTGTCACTGAATATGTATGAAGGTCAGATTACGGCACTACTGGGACACAATGGGGCTGGGAAAACAACACTGATGTCCATGCTAACTGGGCTCTTTCCTGCAACATCTGGTTCAGCACTTGTCAATAGCTGCTCAATCAGTGATAATATCACTGGGGTACGCAGCAGTCTTGGTCTTTGCCCGCAGCACGATGTGTTATTTGACCGTCTGACTGTTGAAGAGCACCTGTGGTTCTTTGCCAAGTTAAAGAAATGCCCATCCTGGCGAGTGAAAGAAGAGATCGACAGAATGATTGATTGTATTGGACTGACTGACAAGCGACACACGCAGGCCCGTAATCTGTCTGGGGGCATGAAAAGAAAACTTTCTGTTGGAATAGCGCTCATTGCTGACTCCAAGGTTGTGATGCTAGACGAGCCAACATCCGGCATGGACCCGTCAGCTCGCAGGTTCACCTGGGATTTGCTGCAGCAACAGAAGGAAGGAAGAACCATCTTGCTCACCACTCACTACATGGACGAGGCAGACATACTAGGCGACAGGATCGCTATCATGGCTGAGGGGAACATCAAATGCTGTGGCTCTTCCCTTTTCCTTAAGAACAAATATGGGGTGGGCTACCACATGGCCATAGTAAAGGAGCCTAATTGTGATGTTTCCAGGGTGACTGATGTCGTCAATGGTCACGTGCCTACAGCAAAACTGGAGAGCAACATTGGTGCTGAACTGTCATTTATTCTGCCAAGTGAAGCAACAGGCAAGTTTGAGGAGCTCTTCATGGAACTGGAAACGCGCCGAAAGGATCTTGGGATTGCTAGTTATGGTGCTTCGGTTACAACTATGGAAGAAGTATTCCTCAAAGTTGGAGAAGAAATGGACAGCACCCTTAGCGATAAATTACAACAGAAAGACAAACAAGAAACGCCATCAGTTAACGGGATGGTCATGAACGGAGACGTCCCAGCGCCGAGCGAAAGATCTTCAGTGCTAGCACGCATGAGCGCCCTCGGATCATCTAACGGTGGTTATGGTACGTTTGGTGACTACAACAGCTACGCGCACTCTTCCGGTTTCCGTCTGCTTCGTCAGCGGTGGTACGCGATGTTTATGAAACGGTTGCTTCACTCCAAAAGACACAAGCTGGCGATTGTTTCACAACTTCTTCTACCTCTGATATACACGCTCATTGCACTTATCAACGCTAAGACCTTCCCCCAGCCCACCGACTCGCCACCGCTCACTCTGTCCACACACAACTTCTTGAACAACTTTGTACCCTGGTCAGCAGAAAGTTTCACTGAGACACTTCGTTTAGCTGAACGTTACAGAACTCAGTGGCATGGTGACAAGACACATCCTGTTCACGTGACTGGTGACATGCAGCAGTACTTGATGAGTAAAGCTCTAGACATGGGACTCGGCGACTTCAACAGAAAAGATTTGATCGCTGCCACCTTTGCGAAACGTAAAGGCAAAGTAAACGTTACGGCGTGGTTCAATAATCAAGCCTTCCATTCCATCGCCGTGTCCCTTGCGGCTGCAGACACTGCCATCTTGCGTTCTACTCTTGGAACAAACTTCTCACTGACGACCATAAACCACCCCCTGCCAAGAACAGCTCAAGAATCCATCAATGATTTACAACGTAACGGCCTTGGATTCATGATCTCGTTCAATGTGTTGTTTGGCATGGCCTTCCTGGCTTCAAGCTTTGTCGTGTTCCTGGTCCAGGAACGAACCAACAAAGCGAAACACGTGCAGTTTGTCAGCGGTGTAGATCCGTTTAGTTACTGGGATTCCGCCTACACATGGGACTTAATCAACTTTCTCCTCCCGACCCTCTCGATAATGATCCTTGTGGCCGCTTTTGACGTCCCTGCTTACACAGGTCCTCGTATTGGCTATCTGTTCCTGTTGATGATGCTATATGGCTGGGCCATTATTCCTCTCATGTATCTCTTCTCTTTTGTGTTTCGTACCGCTTCCACTGCCTTTGTGGTGCTGACTATATTCAACATTATCACAGGACTGGCCACGCTTCTGACCGTCTTTATTCTAAGTATTCCAGGTCTAGACCTCTTGGACGTTGCCGACGCCCTGAAATGGGCCTTTCTCGTTCTACCCAACTACTGCCTGGGCCAGGGAATCGGAGACATGTTCAACAACTACAATGCCTTGGACTACTTCAACAAAGCCGTGGACATGTGTGTTAATTCACCGTATCACCTCCCCAGGAAATCCTGTGAAGAAGAAGTCCGAAAACTAGTCGGCGATCAGCTAGTGTTTCAGGATAATTACCTAGCGTGGGATAACCCCGGTATCGGTCGATACCTGATATTCTTGGCTTGGGAAGGAATCTTTTTCTTTGCGCTCGTGCTGTTGATCGAGTATCGCGTGTTTAACGTGTGTACGCGTTTTTTCGCGCGGTTACGCTCATGCTCCACTGGAGTGTTCACAATGGAGGAGTCGAACTTGGCCGATGATGACGACGTTTTAGCGGAGAAGGAAAGAGTCATGACTTCTACGGATATCGATGATGTGCTTGTTATCAAGGAATTGACAAAGGTCTTCCCTGGACACGGCCGTCGTTCGCCATTGGTTGCGGTGGATCGTTTGAGCCTGGGTGTCCCCATGAGCGAATGTTTTGGTCTCCTTGGAATCAACGGCGCCGGCAAGACGACCGCGTTCCGCATGTTGACTGGTGACGAGACCATGTCAGGCGGCACAGCTGTTGTGGAAGGCTTTGACATCAGAAGCAACATGAACAGGGTTCGCCAGCGCATTGGTTATTGTCCACAGTTTGATGCTTTGATTGATCAGCTGACCGGAAGAGAGCTGCTCTACATGTATGCGCGACTACGAGGCGTACCGGAAACGATGATAGCTGATGTTGTAGAGGATCTCATTAACGCTCTGCTGCTTCAGGAGCACGCTGATAAGTTAACCAGTTCATACAGTGGTGGCAACAAACGAAAGCTCAGCACAGCCATATCACTTGTGGGGGACCCTCCGGTGGTGTTTCTGGACGAGCCCACGACTGGTATGGACCCAGTGGCGAGAAGATTATTATGGGATGCATTGTCACGTGTTCGGGCTGATGGACGATGTATCGTGATTACTTCACACAGCATGGAGGAGTGTGAAGCTCTTTGCACTCGACTGGCCATCATGGTAAACGGACGATTAAAATGCCTAGGAAGTCCGCAACATCTCAAAACCAAGTTTGGCGAGGGCTACACTCTTCTCGCAAGAGTCTCCCGTGATACACCGGATATCAGACCGCTGAAGCAATTTATAGAAGGCTCATTCCCTGGCAGCGTGTTGAAAGATGAGCATCAAGGCATGGTCCACTATCACATCCGCGACACCAGTGTAACGTGGGCTCAGCTGTTTGGGACAATCGAGAAGGTTAAAATGGACTACAACATTGAAGATTACTCTGTTAGCCAGACCACGCTAGAGCAAGTGTTCTTGAACTTCGCCCGAGGACAGAGAGCTGAGGACGAATGA

Protein

Uniprot

Uniprot term	Description
A0A0G2K1Q8	Phospholipid-transporting ATPase ABCA3 OS=Rattus norvegicus OX=10116 GN=Abca3 PE=1 SV=1
Q99758	Phospholipid-transporting ATPase ABCA3 OS=Homo sapiens OX=9606 GN=ABCA3 PE=1 SV=2
Q8R420	Phospholipid-transporting ATPase ABCA3 OS=Mus musculus OX=10090 GN=Abca3 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12698	ABC2_membrane_3	ABC-2 family transporter protein	Family	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR013525	Domain	ABC-2 type transporter, transmembrane domain	Interproscan
IPR026082	Family	ABC transporter A	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19229	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan
GO:0005319	Molecular Function	lipid transporter activity	Interproscan
GO:0006869	Biological Process	lipid transport	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05643	ABCA3; ATP-binding cassette, subfamily A (ABC1), member 3	-	Transporters	ko02000	deepkoala