Genomic Location: chr12:19655161...19664009
NR annotation: XP_020627950.1, ATP-dependent RNA helicase DEAH12, chloroplastic-like isoform X1 [Orbicella faveolata]
| CDS | |||||
| ACROYT_G038030 | |||||
| Transcript |
| rna-ACROYT_G038030.t0 |
| Protein |
| KAL9956542.1 |
| Uniprot term | Description | ||||
|---|---|---|---|---|---|
| F4KGU4 | ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1 | ||||
| P0CE10 | ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01020 PE=3 SV=1 | ||||
| Q09530 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans OX=6239 GN=mog-5 PE=1 SV=1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity|RBR |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07717 | OB_NTP_bind | Oligonucleotide/oligosaccharide-binding (OB)-fold | Domain | Interproscan |
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| PF00270 | DEAD | DEAD/DEAH box helicase | Domain | Interproscan |
| PF01485 | IBR | IBR domain, a half RING-finger domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014001 | Domain | Helicase superfamily 1/2, ATP-binding domain | Interproscan |
| IPR011709 | Domain | DEAD-box helicase, OB fold | Interproscan |
| IPR002464 | Conserved_site | DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR001650 | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR007502 | Domain | Helicase-associated domain | Interproscan |
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR011545 | Domain | DEAD/DEAH box helicase domain | Interproscan |
| IPR044066 | Domain | TRIAD supradomain | Interproscan |
| IPR002867 | Domain | IBR domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR18934 | ATP-DEPENDENT RNA HELICASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0004386 | Molecular Function | helicase activity | Interproscan |
| GO:0005622 | Cellular Component | intracellular anatomical structure | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K12818 | DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22 | EC:5.6.2.6 | Spliceosome | ko03041 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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