Gene detail

Detailed information of KAL9957714.1 in Oculina patagonica

Genomic Location: chr11:1841461...1855141
NR annotation: CAH3134394.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-ACROYT_G034648.t0

ATGATAAAGAAAAGCCGCGATGGCGGCAAATTTGAAAAGTGCAACGAAGTCTTTAAGAAGACTTGTGTCAGTTGCGATCAGTCATTCGAATTCGCGATCGTACGAACAACATACATCTGGAGTGAAATGGAAGCGAATCCAAGTGCTTTTAAGAATTCTGTACCATTTACAGTCAACCCAATGAAGTTTACAGAGGAATCGCCGAAGAGAAAGGCATCGTTCATGGTGGATGATATAGTTAACGTTCGTGGTCCGAACAGTTTGAATTCTCCGTGGACGGACAAATGCTTAGCTGATTCCAATCTTCGAGACAGAGTACCACAGACAAGCGAAGGGCTTCCTTTGAGTAAACAAGATGGCCAAGAATCAAGCCCAGCTCATGTACGATCCAGCAAGTGTCGCTCGTCGTTCTCAGTGGAACAGGTGTTACAATTGGAGCGAGTGTTTGAACGACAGAAATATCTCGGCTCTAGAGACAGACAAAGGCTTGCAGAACAGCTGCAGATGACAGAAACACAGGTGAAGACTTGGTTTCAAAACAGACGAATGAAAATGAAGAGAAAGCAATCCGAGGCCACTGAACGCAGAGCTAAGCTGTCCTTCCTAAACAACCTCGCTTGTAACATGCAACAGAATTACCATGGTTACCAGCCATACTACCCAGCCCAGTGCTCTCCTGCAGGCGCGCCACCTCTCCTCTGTCCAGGCCTAACTCCTCCCGAATGCTCGTGGCCGTACCAATCACCCTTGAATTTCCCGCCAAATCAGCTGGCTCCAAGGTACCTGCcgccgccgccatcttgggaGTGCCTTCCAGAACACATGATCGATAGATGCGCCTCTCTGCTGAACGGCAGCCTTTGGATCTGTGCTTTAAAAGaactattcaccaTGTCGGATGAGGATCGCATGAGATCAGAAATTACAAGAATGCAGATGAGAGGAGATGAACTGACAGACCAGTCCCTGGAAAGTACACGTCGTATGTTACAACTGTCTGAGGAGacCCAAGAGGTGGGAATTAAAACATTGGTGACACTAGATGAACAAGGAGAACAGTTAGACAGGGTGGAAGAAAACTTAGATCAGATCAACGTCGACATGAAGGAAGCAGAAAAGAATTTGACAGGGCTTGAAAAGTGCTGTGGACTGTGTGTCTGTCCTGGGAGAAGGCGGAAGAATTttgagaaaaatgaaaaatacaaGAAAGCCTTTAAGAGTAATGATGATGGAGTTATTGCAACACAGCCTGGTGTCAGGTATCAGCAAGATGGAAACCGGGGAGAAGCTCCTAAAACTGGCTACATACAAAGGATAACTGAAGATGATAGAGAAGATGAAATGGATGAAAACCTTGGACAAGTGTCTAACATTGTTGGTAACTTGAAATCAATGGCAATGGACATGGGAAATGAGATTGACACTCAGAACAGACAGCTGGATCGTATCAATGCAAAGGCTGAAGCAAATGATCTCCGAATTCAACAGGCAAATACACGAGCAAGGGATATCTTAAGAAACTGCTGAATCGCACTGGCCTTGCCGATGTTCTTTAGTCTTTAATTGCCAAATAATAATAAGCACTAATAGGTCTGACTTCTTTAACTGGTCTGACTTGTTTGACTGGTTTGACTGGCTTTTTGTTAAAGCCTGCCTGTGAATAGGTATTCTGCGAATTCATTCGACATATATAACTGGGAATATTTTACAGTGTCAAATAGcaaatggaaaaaaaagaacactTGTTCATTCAACACACATTTTTAGGTTATTATGTAATAGACTGTGAAATTATAGCCCTACACACTGTAACACAAgtacttttgtttctttttgctcTGCTGGTGGCTGTGATGTCTTTGAATCTTTTTTTATGctcaaaagaaaaatgcaacagTTGAGAGCAGCATCTATAATgttaccagaaaaaaaaaaaacagatttctTTGTTACCATGATCAATTGGGCAGATTGTTCCCATctacaatatttttctttgctgtGAGCAAGGTTACATAATTGgtcattttaaataattagATGACAACAATGACATTGTGTTATTTCTCTGTATATATTGTATGACCACATTCTTGTAGTTTCATTGGTATCACATTATCTGAGATAAGAAGATTTAGTtttgtcaaaataaaataattttacacaGT

Protein

Uniprot

Uniprot term	Description
P36976	Synaptosomal-associated protein 25 OS=Torpedo marmorata OX=7788 GN=snap25 PE=2 SV=1
P36975	Synaptosomal-associated protein 25 OS=Drosophila melanogaster OX=7227 GN=Snap25 PE=2 SV=1
P36978	Synaptosomal-associated protein 25-B OS=Carassius auratus OX=7957 GN=snap25b PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00835	SNAP-25	SNAP-25 family	Family	Interproscan
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000928	Domain	SNAP-25 domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR000727	Domain	Target SNARE coiled-coil homology domain	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19305	SYNAPTOSOMAL ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005484	Molecular Function	SNAP receptor activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006887	Biological Process	exocytosis	Interproscan
GO:0006906	Biological Process	vesicle fusion	Interproscan
GO:0016082	Biological Process	synaptic vesicle priming	Interproscan
GO:0019905	Molecular Function	syntaxin binding	Interproscan
GO:0031201	Cellular Component	SNARE complex	Interproscan
GO:0031629	Biological Process	synaptic vesicle fusion to presynaptic active zone membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18211	SNAP25; synaptosomal-associated protein 25	-	Membrane trafficking	ko04131	deepkoala