Detailed information of KAL9962306.1 in Oculina patagonica

Genomic Location: chr9:18647214...18658810
NR annotation: XP_020630105.1, uncharacterized protein LOC110067152, partial [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P98160Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens OX=9606 GN=HSPG2 PE=1 SV=4
Q05793Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus OX=10090 GN=Hspg2 PE=1 SV=1
D3YXG0Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR050958FamilyCell Adhesion and Cytoskeletal OrganizationInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45080CONTACTIN 5Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0008046Molecular Functionaxon guidance receptor activityInterproscan
GO:0030424Cellular ComponentaxonInterproscan
GO:0043025Cellular Componentneuronal cell bodyInterproscan
GO:0050808Biological Processsynapse organizationInterproscan

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