Gene detail

Detailed information of KAL9963008.1 in Oculina patagonica

Genomic Location: chr9:27194945...27199011
NR annotation: KAJ7361805.1, hypothetical protein OS493_014446 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

ACROYT_G032169

ATGTCGAGTAGGAAAAGGAAACAGAAACCGCCGGAAAAATTCAGCGAAGAAAAGCGAACAAAAATGACATGGAACATGTTTGACCAACATGTGCAGGCAATGAGCGCTTGTGAAGAATCAACGACAACAAGTTTCAGTTACTCTCCTACAGCTTCAACCAGTGAAATTAACAGTACTTCAAGAGGATTAAATTCAAGGAAAAGGAATAAGAAACAGACTGATGATCGAAGCCAAAACTTGGAGTTAAATCTGGACAATACATATTCTCCAAGCTGCGTGTGTCAACTAGGTCTGTTCAATGTCAGCTTATGTACCAGCAAAACTCAAGAGGCTGAAGTAAGAACAGTGAATGGAGCAAATGTATCTTCTCTTACTGATGAGCTGTGGATTACTGATTGCCTAACTTGTGTTATTGTAAGGCTGTCCTTTGAGCCACAATCTCCGTTATCAGAGAACATGGATTTGAATGGGTTAAACAATGGCTGTTTGAGGCAGGTCTCATTTAGGGCTGCAGTTCCTTCTGTGTCAAAGGATAGACTAGAAGCATTAGTTTATCTGCAAAACAAAGGAGTTGTATCCCTGGTGTTGAGACCGGAGCAGCGTGTTTTAAAAGACTGCTGGGAAGTTGTGGTGTGTTTGAATGAGAGTGGTTTAACAAAGGTGCCTTTTGCTAGTATGGATGTGACCTACAGGAAAACCGACAAGATGACTAAAGTGCTAATGGAATGGTTTTATAAATTTCCTGTGAAGAATGATTTGGTTTCACAGGAGTGTAATAACACTGTACTAGATAAAAGTTTTGATGGACTGTACGATGCCATTAAATCTGTTCGAGGGAGGAACTGCTCTTCGGATTCAGAAATACAAGCAGTTACCACATTGCCGCAAAACTCTTCACCTTCTGATCTTCAACCCTGCCATTCATGCAGCGCACGCAATGATTGTAGATGTAAATGTAATGGACAGCTCAGCAGATCAAATGGAGTTAGTGCATTTGACGTACAGCATCCTTTTTTGAAACCTGTTCTAAGAGGTTATCAAAGGAGAGCTGTGAAGTGGATGCTGAGAAAAGAACAAGGCTGTCAGAGGACATTCTACACAAAGCAACTTGATGCTGATACAATTCACCCATTATGGCGGGAAGTTCACAGTTTGGATGGAAAGTTGATATACTTTAATCCATACACTGGAAGACTCACAAAAGAAAGATTTTGCTTGCCGTCACTACCTCTTGGAGGAATCTTAGCAGATGAAATGGGACTCGGAAAGACGGTGGAGGTTATCGCATGTATTTTATGTCATCGTAAACCTTCATCAGATCACAAGTCACTAAACAAAACTGCGACAGCTGGCCAGTACTCAAGTATTAGTCAAACCAGCACAGCAACATCACTTAACAAGGAACCTTCTAAATTGGAATCTACAGAACGTGACATTTCCAGCCAGGGAACTGACGGAACTGTTAGCAATACAAATAAACCAGATCCTGATTGTAGTAAAATTTACAATGATACAGCAGATTCCACCTCTGATGCCCAAGTTTCAACTTGTTCTGAAGCTGCCTTGACGTTATGTAATGGCGATAGTGATAAGGATAACAAAACAGTCACTGAAGGAAGTGATGACCCTACTTGTACATCTGCTCACAGTACAACACCACATAATCAGTCAAACAAGCTTGATGTTGTTCAAAGTGATCAAGAAGCCACCAGTTCAGAGTTTGTTACATCAGTTGAAGAAAGAACTGCTTCTATTAAATGCCAGTGTATCTGTGGTATAAATGTCGCCAGCTGTGACGACAAACTGTTGCAGTGTTGTGGGTGTCAAGCAGTCTTCCATGCTGAGTGTCTAAATTATAACTGTCCGGGCGAATTTTTGTGTCCACACTGTGCAGTGAACAGGCCAGCCATTCCATCCCGAGCTACTCTGATCATCTCTCCAGCCCCTATTGCCCAGCAGTGGGTGGACGAGATCTCCAGGCACACAGAACCATCAACTCTGAAACTGCTGGTAAGAAAGTGA

Transcript

rna-ACROYT_G032169.t0

CCAAACATTTTGCTCGATCATAAACAGACAGGGTAAAattatgtaatttttttcaagttaaagGTTTTCTTTTCGAAAAGTATTCAATTAGCAGAAAAGAAGATTTTCCTAAGATGTCGAGTAGGAAAAGGAAACAGAAACCGCCGGAAAAATTCAGCGAAGAAAAGCGAACAAAAATGACATGGAACATGTTTGACCAACATGTGCAGGCAATGAGCGCTTGTGAAGAATCAACGACAACAAGTTTCAGTTACTCTCCTACAGCTTCAACCAGTGAAATTAACAGTACTTCAAGAGGATTAAATTCAAGGAAAAGGAATAAGAAACAGACTGATGATCGAAGCCAAAACTTGGAGTTAAATCTGGACAATACATATTCTCCAAGCTGCGTGTGTCAACTAGGTCTGTTCAATGTCAGCTTATGTACCAGCAAAACTCAAGAGGCTGAAGTAAGAACAGTGAATGGAGCAAATGTATCTTCTCTTACTGATGAGCTGTGGATTACTGATTGCCTAACTTGTGTTATTGTAAGGCTGTCCTTTGAGCCACAATCTCCGTTATCAGAGAACATGGATTTGAATGGGTTAAACAATGGCTGTTTGAGGCAGGTCTCATTTAGGGCTGCAGTTCCTTCTGTGTCAAAGGATAGACTAGAAGCATTAGTTTATCTGCAAAACAAAGGAGTTGTATCCCTGGTGTTGAGACCGGAGCAGCGTGTTTTAAAAGACTGCTGGGAAGTTGTGGTGTGTTTGAATGAGAGTGGTTTAACAAAGGTGCCTTTTGCTAGTATGGATGTGACCTACAGGAAAACCGACAAGATGACTAAAGTGCTAATGGAATGGTTTTATAAATTTCCTGTGAAGAATGATTTGGTTTCACAGGAGTGTAATAACACTGTACTAGATAAAAGTTTTGATGGACTGTACGATGCCATTAAATCTGTTCGAGGGAGGAACTGCTCTTCGGATTCAGAAATACAAGCAGTTACCACATTGCCGCAAAACTCTTCACCTTCTGATCTTCAACCCTGCCATTCATGCAGCGCACGCAATGATTGTAGATGTAAATGTAATGGACAGCTCAGCAGATCAAATGGAGTTAGTGCATTTGACGTACAGCATCCTTTTTTGAAACCTGTTCTAAGAGGTTATCAAAGGAGAGCTGTGAAGTGGATGCTGAGAAAAGAACAAGGCTGTCAGAGGACATTCTACACAAAGCAACTTGATGCTGATACAATTCACCCATTATGGCGGGAAGTTCACAGTTTGGATGGAAAGTTGATATACTTTAATCCATACACTGGAAGACTCACAAAAGAAAGATTTTGCTTGCCGTCACTACCTCTTGGAGGAATCTTAGCAGATGAAATGGGACTCGGAAAGACGGTGGAGGTTATCGCATGTATTTTATGTCATCGTAAACCTTCATCAGATCACAAGTCACTAAACAAAACTGCGACAGCTGGCCAGTACTCAAGTATTAGTCAAACCAGCACAGCAACATCACTTAACAAGGAACCTTCTAAATTGGAATCTACAGAACGTGACATTTCCAGCCAGGGAACTGACGGAACTGTTAGCAATACAAATAAACCAGATCCTGATTGTAGTAAAATTTACAATGATACAGCAGATTCCACCTCTGATGCCCAAGTTTCAACTTGTTCTGAAGCTGCCTTGACGTTATGTAATGGCGATAGTGATAAGGATAACAAAACAGTCACTGAAGGAAGTGATGACCCTACTTGTACATCTGCTCACAGTACAACACCACATAATCAGTCAAACAAGCTTGATGTTGTTCAAAGTGATCAAGAAGCCACCAGTTCAGAGTTTGTTACATCAGTTGAAGAAAGAACTGCTTCTATTAAATGCCAGTGTATCTGTGGTATAAATGTCGCCAGCTGTGACGACAAACTGTTGCAGTGTTGTGGGTGTCAAGCAGTCTTCCATGCTGAGTGTCTAAATTATAACTGTCCGGGCGAATTTTTGTGTCCACACTGTGCAGTGAACAGGCCAGCCATTCCATCCCGAGCTACTCTGATCATCTCTCCAGCCCCTATTGCCCAGCAGTGGGTGGACGAGATCTCCAGGCACACAGAACCATCAACTCTGAAACTGCTGGTAAGAAAGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR052583	Family	ATP-dependent Helicase/E3 Ubiquitin Ligase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45865	E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006974	Biological Process	DNA damage response	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan