Detailed information of KAL9966980.1 in Oculina patagonica

Genomic Location: chr7:13533082...13545456
NR annotation: XP_020630245.1, translin-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q08DM8Translin OS=Bos taurus OX=9913 GN=TSN PE=2 SV=1
Q8TAQ2SWI/SNF complex subunit SMARCC2 OS=Homo sapiens OX=9606 GN=SMARCC2 PE=1 SV=1
Q62348Translin OS=Mus musculus OX=10090 GN=Tsn PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16495SWIRM-assoc_1SWIRM-associated region 1FamilyInterproscan
PF16498SWIRM-assoc_3SWIRM-associated domain at the C-terminalFamilyInterproscan
PF01997TranslinTranslin familyFamilyInterproscan
PF00249Myb_DNA-bindingMyb-like DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR033956FamilyTranslinInterproscan
IPR001005DomainSANT/Myb domainInterproscan
IPR017884DomainSANT domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR016068Homologous_superfamilyTranslin, N-terminalInterproscan
IPR036081Homologous_superfamilyTranslin superfamilyInterproscan
IPR032451DomainSMARCC, C-terminalInterproscan
IPR032448DomainSMARCC, SWIRM-associated domainInterproscan
IPR016069Homologous_superfamilyTranslin, C-terminalInterproscan
IPR002848FamilyTranslin familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12802SWI/SNF COMPLEX-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0016070Biological ProcessRNA metabolic processInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0016514Cellular ComponentSWI/SNF complexInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0045893Biological Processpositive regulation of DNA-templated transcriptionInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan

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