Gene detail

Detailed information of KAL9967398.1 in Oculina patagonica

Genomic Location: chr7:19112853...19127250
NR annotation: XP_020612749.1, neurogenic locus notch homolog protein 1-like [Orbicella faveolata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q90611	72 kDa type IV collagenase OS=Gallus gallus OX=9031 GN=MMP2 PE=1 SV=1
P50282	Matrix metalloproteinase-9 OS=Rattus norvegicus OX=10116 GN=Mmp9 PE=2 SV=1
O18733	Matrix metalloproteinase-9 OS=Canis lupus familiaris OX=9615 GN=MMP9 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00040	fn2	Fibronectin type II domain	Domain	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00008	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR000562	Domain	Fibronectin type II domain	Interproscan
IPR036943	Homologous_superfamily	Fibronectin type II domain superfamily	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR051022	Family	Notch Signaling and Cell Fate Determination	Interproscan
IPR013806	Homologous_superfamily	Kringle-like fold	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007157	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0032991	Cellular Component	protein-containing complex	Interproscan
GO:0045197	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan